Name: Winogradskyella damuponensis F081-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133845

Type strain:

Species: Winogradskyella damuponensis

Strain Designation: F081-2

Culture col. no.: KCTC 23552, JCM 17633

Strain history: S. J. Cho F081-2.

NCBI tax ID(s): 943939 (species)

Special Collections

Section

Winogradskyella damuponensis F081-2 is an aerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Winogradskyella*
	Species	**Winogradskyella damuponensis**
	Full Scientific Name (LPSN)	Winogradskyella damuponensis Lee et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30661]	Gram stain	negative

[Ref.: #30661]	Cell length	1 µm

[Ref.: #30661]	Cell width	0.4 µm

[Ref.: #30661]	Cell shape	rod-shaped

[Ref.: #30661]	Motility	yes

[Ref.: #30661]	Flagellum arrangement	gliding

[Ref.: #30661]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30661]	growth	04-35 °C
[Ref.: #30661]	optimum	27.5 °C
[Ref.: #67770]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #30661]			optimum	7.75
[Ref.: #30661]			growth	6-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30661]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30661]		NaCl		growth	01-05	%
[Ref.: #30661]		NaCl		optimum	3	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30661]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #30661]	acetate ChEBI	+	carbon source
[Ref.: #30661]	alanine ChEBI	+	carbon source
[Ref.: #30661]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #30661]	asparagine ChEBI	+	carbon source
[Ref.: #30661]	aspartate ChEBI	+	carbon source
[Ref.: #30661]	cellobiose ChEBI	+	carbon source
[Ref.: #30661]	citrate ChEBI	+	carbon source
[Ref.: #30661]	dextrin ChEBI	+	carbon source
[Ref.: #30661]	esculin ChEBI	+	hydrolysis
[Ref.: #30661]	fructose ChEBI	+	carbon source
[Ref.: #30661]	fucose ChEBI	+	carbon source
[Ref.: #30661]	galactose ChEBI	+	carbon source
[Ref.: #30661]	galacturonate ChEBI	+	carbon source
[Ref.: #30661]	gluconate ChEBI	+	carbon source
[Ref.: #30661]	glucose ChEBI	+	carbon source
[Ref.: #30661]	glucuronamide ChEBI	+	carbon source
[Ref.: #30661]	glutamate ChEBI	+	carbon source
[Ref.: #30661]	inosine ChEBI	+	carbon source
[Ref.: #30661]	L-alaninamide ChEBI	+	carbon source
[Ref.: #30661]	L-arabitol ChEBI	+	carbon source
[Ref.: #30661]	lactose ChEBI	+	carbon source
[Ref.: #30661]	maltose ChEBI	+	carbon source
[Ref.: #30661]	mannitol ChEBI	+	carbon source
[Ref.: #30661]	mannose ChEBI	+	carbon source
[Ref.: #30661]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #30661]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30661]	ornithine ChEBI	+	carbon source
[Ref.: #30661]	phenylalanine ChEBI	+	carbon source
[Ref.: #30661]	phenylethylamine ChEBI	+	carbon source
[Ref.: #30661]	proline ChEBI	+	carbon source
[Ref.: #30661]	raffinose ChEBI	+	carbon source
[Ref.: #30661]	ribitol ChEBI	+	carbon source
[Ref.: #30661]	sorbitol ChEBI	+	carbon source
[Ref.: #30661]	succinate ChEBI	+	carbon source
[Ref.: #30661]	sucrose ChEBI	+	carbon source
[Ref.: #30661]	trehalose ChEBI	+	carbon source
[Ref.: #30661]	tween 20 ChEBI	+	carbon source
[Ref.: #30661]	tween 40 ChEBI	+	carbon source
[Ref.: #30661]	tween 80 ChEBI	+	carbon source
[Ref.: #30661]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30661]	acid phosphatase	+	3.1.3.2
[Ref.: #30661]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30661]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30661]	catalase	+	1.11.1.6
[Ref.: #30661]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30661]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Seawater at Damupo beach in Pohang
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ336488 (>99% sequence identity) for Winogradskyella damuponensis from Microbeatlas

Aquatic Samples	157
Soil Samples	5
Animal Samples	4
Plant Samples
Total Samples	166

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30661]	Winogradskyella damuponensis strain F081-2 16S ribosomal RNA gene, partial sequence	HQ336488	1448	GenBank ENA	943939 tax ID

[Ref.: #30661]	GC-content	32.3 mol%
[Ref.: #67770]	GC-content	32.3 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #30661]

Culture collection no.

KCTC 23552, JCM 17633

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Winogradskyella damuponensis sp. nov., isolated from seawater.	Lee DH, Cho SJ, Kim SM, Lee SB	Int J Syst Evol Microbiol	10.1099/ijs.0.041384-0	2012	*
Phylogeny	Winogradskyella algae sp. nov., a marine bacterium isolated from the brown alga.	Kurilenko VV, Romanenko LA, Isaeva MP, Svetashev VI, Mikhailov VV	Antonie Van Leeuwenhoek	10.1007/s10482-018-1207-5	2018	*
Phylogeny	Winogradskyella profunda sp. nov. isolated from the Chukchi Sea bottom sediments.	Romanenko LA, Kurilenko VV, Guzev KV, Svetashev VI, Mikhailov VV	Arch Microbiol	10.1007/s00203-018-1567-2	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30661

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26992 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26992

IJSEM 321 2013 ( DOI 10.1099/ijs.0.041384-0 , PubMed 22427445 )

* These data were automatically processed and therefore are not curated

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