Name: Oxalicibacterium solurbis MY14
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 11347

Type strain:

Species: Oxalicibacterium solurbis

Strain Designation: MY14

Culture col. no.: DSM 24954, CCM 7664, NBRC 102665

Strain history: <- CCM <- N. Sahin <- T. Iizuka

NCBI tax ID(s): 69280 (species)

SI-ID 396868

DSM 24954

Special Collections

DSMZ

Section

Oxalicibacterium solurbis MY14 is a Gram-negative bacterium that was isolated from urban soil.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Oxalicibacterium*
	Species	**Oxalicibacterium solurbis**
	Full Scientific Name (LPSN)	Oxalicibacterium solurbis Sahin et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17809]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #17809]

Culture medium growth

[Ref.: #17809]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17809]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17809]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17809]	Sample type/isolated from	urban soil
[Ref.: #17809]	Country	Japan
[Ref.: #17809]	Country ISO 3 Code	JPN
[Ref.: #17809]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17809]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17809]	Oxalicibacterium solurbis gene for 16S rRNA, partial sequence, strain: MY14	AB008503	1459	GenBank ENA	69280 tax ID
[Ref.: #20218]	Oxalicibacterium solurbis gene for 16S rRNA, partial sequence, strain: NBRC 102665	AB681897	1462	GenBank ENA	69280 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Oxalicibacterium solurbis CCM 7664	GCA_014635845	contig	GenBank ENA	69280 tax ID	*
[Ref.: #66792]	Oxalicibacterium solurbis strain CCM 7664	69280.3	wgs	PATRIC	69280 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Oxalicibacterium solurbis strain CCM 7664 PATRIC: 69280.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Oxalicibacterium solurbis strain CCM 7664 PATRIC: 69280.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.313	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.254	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	78.819	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.699	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	81.138	no

Availability in culture collections External links

[Ref.: #17809]

Culture collection no.

DSM 24954, CCM 7664, NBRC 102665

[Ref.: #80580]

SI-ID 396868

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of two aerobic ultramicrobacteria isolated from urban soil and a description of Oxalicibacterium solurbis sp. nov.	Sahin N, Gonzalez JM, Iizuka T, Hill JE	FEMS Microbiol Lett	10.1111/j.1574-6968.2010.01954.x	2010	*

References

#17809

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24954

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#80580

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396868.1 )

* These data were automatically processed and therefore are not curated

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Oxalicibacterium solurbis strain CCM 7664

Oxalicibacterium solurbis strain CCM 7664

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