Name: Oxalicibacterium horti OD1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11346

Type strain:

Species: Oxalicibacterium horti

Strain Designation: OD1

Culture col. no.: DSM 21640, NBRC 13594

Strain history: <- N. Sahin, Mugla University, Kötekli; OD1 <- NBRC <- G. C. N. Jayasuriya

NCBI tax ID(s): 573739 (species)

SI-ID 59540

NCIMB 8735, IFO13594, NCIB 8735, NBRC 13594, BCRC 11911, CCRC 11911, DSM 21640

Section

Oxalicibacterium horti OD1 is a mesophilic bacterium that was isolated from garden soil.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Oxalicibacterium*
	Species	**Oxalicibacterium horti**
	Full Scientific Name (LPSN)	Oxalicibacterium horti Sahin et al. 2009

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15854]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #15854]

Culture medium growth

[Ref.: #15854]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15854]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15854]			growth	28 °C

[Ref.: #15854]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15854]	Sample type/isolated from	garden soil
[Ref.: #15854]	Country	USA
[Ref.: #15854]	Country ISO 3 Code	USA
[Ref.: #15854]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15854]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15854]	Oxalicibacterium horti gene for 16S rRNA, partial sequence	AB469786	1489	ENA	573739 tax ID
[Ref.: #20218]	Oxalicibacterium horti gene for 16S rRNA, partial sequence, strain: NBRC 13594	AB680454	1462	ENA	573739 tax ID	*

[Ref.: #15854]

GC-content

59.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #15854]

Culture collection no.

DSM 21640, NBRC 13594

[Ref.: #80579]

SI-ID 59540

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Oxalicibacterium horti sp. nov. and Oxalicibacterium faecigallinarum sp. nov., new aerobic, yellow-pigmented, oxalotrophic bacteria.	Sahin N, Portillo MC, Kato Y, Schumann P	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01636.x	2009	*

References

#15854

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21640

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#80579

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID59540.1 )

* These data were automatically processed and therefore are not curated

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