Name: Corallococcus exiguus Cc e167
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 9436

Type strain:

Species: Corallococcus exiguus

Strain Designation: Cc e167

Culture col. no.: DSM 14696, CIP 109129, JCM 12620, Cc e167

Strain history: CIP <- 2006, DSMZ <- H. Reichenbach, GBF, Braunschweig, Germany: strain Cc e167

NCBI tax ID(s): 83462 (species)

SI-ID 132558

DSM 14696, CIP 109129, JCM 12620

Other strains from Corallococcus exiguus

C. exiguus Cc e163, DSM 14720
C. exiguus Cc e4, DSM 51820
C. exiguus Cc e5, DSM 51821
C. exiguus Cc e6, DSM 51822
C. exiguus Cc e8, DSM 51823
C. exiguus Cc e9, DSM 51824
C. exiguus Cc e10, DSM 51825
C. exiguus Cc e11, DSM 51826
C. exiguus Cc e12, DSM 51827
C. exiguus Cc e13, DSM 51828
C. exiguus Cc e14, DSM 51829
C. exiguus Cc e15, DSM 51830
C. exiguus Cc e16, DSM 51831
C. exiguus Cc e17, DSM 51832
C. exiguus Cc e20, DSM 51833
C. exiguus Cc e21, DSM 51834
C. exiguus Cc e22, DSM 51835
C. exiguus Cc e23, DSM 51836
C. exiguus Cc e24, DSM 51837
C. exiguus Cc e25, DSM 51838
C. exiguus Cc e27, DSM 51839
C. exiguus Cc e30, DSM 51840
C. exiguus Cc e31, DSM 51841
C. exiguus Cc e32, DSM 51842
C. exiguus Cc e33, DSM 51843
C. exiguus Cc e34, DSM 51844
C. exiguus Cc e38, DSM 51845
C. exiguus Cc e39, DSM 51846
C. exiguus Cc e40, DSM 51847
C. exiguus Cc e41, DSM 51848
C. exiguus Cc e43, DSM 51849
C. exiguus Cc e47, DSM 51850
C. exiguus Cc e48, DSM 51851
C. exiguus Cc e50, DSM 51852
C. exiguus Cc e51, DSM 51853
C. exiguus Cc e52, DSM 51854
C. exiguus Cc e54, DSM 51855
C. exiguus Cc e55, DSM 51856
C. exiguus Cc e56, DSM 51857
C. exiguus Cc e58, DSM 51858
C. exiguus Cc e59, DSM 51859
C. exiguus Cc e60, DSM 51860
C. exiguus Cc e61, DSM 51861
C. exiguus Cc e62, DSM 51862
C. exiguus Cc e71, DSM 51863
C. exiguus Cc e72, DSM 51864
C. exiguus Cc e73, DSM 51865
C. exiguus Cc e76, DSM 51866
C. exiguus Cc e77, DSM 51867
C. exiguus Cc e78, DSM 51868
C. exiguus Cc e79, DSM 51869
C. exiguus Cc e80, DSM 51870
C. exiguus Cc e81, DSM 51871
C. exiguus Cc e82, DSM 51872
C. exiguus Cc e84, DSM 51873
C. exiguus Cc e85, DSM 51874
C. exiguus Cc e86, DSM 51875
C. exiguus Cc e87, DSM 51876
C. exiguus Cc e88, DSM 51877
C. exiguus Cc e89, DSM 51878
C. exiguus Cc e90, DSM 51879
C. exiguus Cc e91, DSM 51880
C. exiguus Cc e92, DSM 51881
C. exiguus Cc e93, DSM 51882
C. exiguus Cc e94, DSM 51883
C. exiguus Cc e95, DSM 51884
C. exiguus Cc e96, DSM 51885
C. exiguus Cc e97, DSM 51886
C. exiguus Cc e98, DSM 51887
C. exiguus Cc e99, DSM 51888
C. exiguus Cc e100, DSM 51889
C. exiguus Cc e101, DSM 51890
C. exiguus Cc e102, DSM 51891
C. exiguus Cc e103, DSM 51892
C. exiguus Cc e104, DSM 51893
C. exiguus Cc e105, DSM 51894
C. exiguus Cc e106, DSM 51895
C. exiguus Cc e107, DSM 51896
C. exiguus Cc e108, DSM 51897
C. exiguus Cc e109, DSM 51898
C. exiguus Cc e110, DSM 51899
C. exiguus Cc e111, DSM 51900
C. exiguus Cc e112, DSM 51901
C. exiguus Cc e113, DSM 51902
C. exiguus Cc e114, DSM 51903
C. exiguus Cc e115, DSM 51904
C. exiguus Cc e116, DSM 51905
C. exiguus Cc e117, DSM 51906
C. exiguus Cc e118, DSM 51907
C. exiguus Cc e119, DSM 51908
C. exiguus Cc e120, DSM 51909
C. exiguus Cc e121, DSM 51910
C. exiguus Cc e122, DSM 51911
C. exiguus Cc e123, DSM 51912
C. exiguus Cc e124, DSM 51913
C. exiguus Cc e126, DSM 51914
C. exiguus Cc e127, DSM 51915
C. exiguus Cc e128, DSM 51916
C. exiguus Cc e129, DSM 51917
C. exiguus Cc e130, DSM 51918
C. exiguus Cc e131, DSM 51919
C. exiguus Cc e132, DSM 51920
C. exiguus Cc e133, DSM 51921
C. exiguus Cc e134, DSM 51922
C. exiguus Cc e136, DSM 51923
C. exiguus Cc e138, DSM 51924
C. exiguus Cc e139, DSM 51925
C. exiguus Cc e140, DSM 51926
C. exiguus Cc e141, DSM 51927
C. exiguus Cc e142, DSM 51928
C. exiguus Cc e143, DSM 51929
C. exiguus Cc e144, DSM 51930
C. exiguus Cc e145, DSM 51931
C. exiguus Cc e146, DSM 51932
C. exiguus Cc e147, DSM 51933
C. exiguus Cc e148, DSM 51934
C. exiguus Cc e149, DSM 51935
C. exiguus Cc e151, DSM 51936
C. exiguus Cc e152, DSM 51937
C. exiguus Cc e153, DSM 51938
C. exiguus Cc e154, DSM 51939
C. exiguus Cc e155, DSM 51940
C. exiguus Cc e156, DSM 51941
C. exiguus Cc e159, DSM 51942
C. exiguus Cc e164, DSM 51943
C. exiguus Cc e165, DSM 51944
C. exiguus Cc e166, DSM 51945
C. exiguus Cc e168, DSM 51946
C. exiguus Cc e169, DSM 51947
C. exiguus Cc e170, DSM 51948
C. exiguus Cc e171, DSM 51949
C. exiguus Cc e172, DSM 51950
C. exiguus Cc e19, DSM 52506
C. exiguus Cc e28, DSM 52507
C. exiguus Cc e36, DSM 52508
C. exiguus Cc e74, DSM 52509
C. exiguus Cc e26, DSM 53642

Section

Corallococcus exiguus Cc e167 is a mesophilic, Gram-positive, rod-shaped bacterium that builds a fruiting body and was isolated from soil with decaying plant material.

Gram-positive
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Myxococcaceae*
	Genus	*Corallococcus*
	Species	**Corallococcus exiguus**
	Full Scientific Name (LPSN)	Corallococcus exiguus (ex Kofler 1913) Reichenbach 2007

Information on morphological and physiological properties Morphology

[Ref.: #119154]	Gram stain	positive

[Ref.: #119154]	Cell shape	rod-shaped

[Ref.: #119154]	Motility	no

[Ref.: #18281]	Multicellular complex forming ability	yes *
[Ref.: #18281]	Multicellular complex name	fruiting body *

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5488]

Culture medium

CY-AGAR (DSMZ Medium 67)

[Ref.: #5488]

Culture medium growth

[Ref.: #5488]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5488]

Culture medium composition

expand / minimize

[Ref.: #5488]

Culture medium

VY/2 AGAR (DSMZ Medium 9)

[Ref.: #5488]

Culture medium growth

[Ref.: #5488]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5488]

Culture medium composition

expand / minimize

[Ref.: #119154]

Culture medium

CIP Medium 657

[Ref.: #119154]

Culture medium growth

[Ref.: #119154]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #5488]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #5488]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5488]	Sample type/isolated from	soil with decaying plant material
[Ref.: #5488]	Geographic location (country and/or sea, region)	Oranje Free State
[Ref.: #5488]	Country	South Africa
[Ref.: #5488]	Country ISO 3 Code	ZAF
[Ref.: #5488]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Soil with rotting wood and other plant material
[Ref.: #67770]	Country	South Africa
[Ref.: #67770]	Country ISO 3 Code	ZAF
[Ref.: #67770]	Continent	Africa

[Ref.: #119154]	Sample type/isolated from	Environment, Soil with decaying plant material
[Ref.: #119154]	Geographic location (country and/or sea, region)	Orange free state
[Ref.: #119154]	Country	South Africa
[Ref.: #119154]	Country ISO 3 Code	ZAF
[Ref.: #119154]	Continent	Africa
[Ref.: #119154]	Isolation date	1998
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Decomposing plant

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ811598 (>99% sequence identity) for Corallococcus from Microbeatlas

Aquatic Samples	1100
Soil Samples	9280
Animal Samples	872
Plant Samples	1959
Total Samples	13211

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5488]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119154]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5488]	Corallococcus exiguus 16S rRNA gene, type strain DSM 14696	AJ811598	1517	ENA	83462 tax ID
[Ref.: #20218]	Corallococcus exiguus strain DSM 14696 16S ribosomal RNA gene, partial sequence	DQ768121	1493	ENA	83462 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Corallococcus exiguus DSM 14696	GCA_009909105	contig	GenBank	83462 tax ID	*
[Ref.: #66792]	Corallococcus exiguus strain DSM 14696	83462.4	wgs	PATRIC	83462 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Corallococcus exiguus strain DSM 14696 PATRIC: 83462.4
[Ref.: #69480]	motile	no	61.949	no
[Ref.: #69480]	flagellated	no	89.71	no
[Ref.: #69480]	gram-positive	no	95.463	no
[Ref.: #69480]	anaerobic	no	98.142	no
[Ref.: #69480]	halophile	no	89.803	no
[Ref.: #69480]	spore-forming	no	80.341	no
[Ref.: #69480]	thermophile	no	98.964	yes
[Ref.: #69480]	glucose-util	yes	72.889	no
[Ref.: #69480]	aerobic	yes	80.416	no
[Ref.: #69480]	glucose-ferment	no	88.907	no

Availability in culture collections External links

[Ref.: #5488]

Culture collection no.

DSM 14696, CIP 109129, JCM 12620, Cc e167

[Ref.: #78815]

SI-ID 132558

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Predatory Organisms with Untapped Biosynthetic Potential: Descriptions of Novel Corallococcus Species C. aberystwythensis sp. nov., C. carmarthensis sp. nov., C. exercitus sp. nov., C. interemptor sp. nov., C. llansteffanensis sp. nov., C. praedator sp. nov., C. sicarius sp. nov., and C. terminator sp. nov.	Livingstone PG, Ingleby O, Girdwood S, Cookson AR, Morphew RM, Whitworth DE	Appl Environ Microbiol	10.1128/AEM.01931-19	2020	*
Phylogeny	Simulacricoccus ruber gen. nov., sp. nov., a microaerotolerant, non-fruiting, myxospore-forming soil myxobacterium and emended description of the family Myxococcaceae.	Garcia R, Muller R	Int J Syst Evol Microbiol	10.1099/ijsem.0.002936	2018	*
Phylogeny	Aggregicoccus edonensis gen. nov., sp. nov., an unusually aggregating myxobacterium isolated from a soil sample.	Sood S, Awal RP, Wink J, Mohr KI, Rohde M, Stadler M, Kampfer P, Glaeser SP, Schumann P, Garcia R, Muller R	Int J Syst Evol Microbiol	10.1099/ijs.0.061176-0	2014	*
Phylogeny	Taxonomic characterization of members of the genus Corallococcus: molecular divergence versus phenotypic coherency.	Stackebrandt E, Pauker O, Steiner U, Schumann P, Straubler B, Heibei S, Lang E	Syst Appl Microbiol	10.1016/j.syapm.2006.03.002	2006	*

References

#5488

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14696

#18281

Reichenbach, H.: Collection description and documentation of myxobacteria by H. Reichenbach, HZI (formerly GBF); Collection curr. located at the DSMZ . Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#78815

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID132558.1 )

#119154 Collection of Institut Pasteur ; Curators of the CIP; CIP 109129
* These data were automatically processed and therefore are not curated

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Corallococcus exiguus strain DSM 14696

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