Mycobacterium kumamotonense CST 7247 | Type strain | DSM 45093, CCUG 51961, GTC 2729, JCM 13453

Strain identifier

BacDive ID: 8555

Type strain:

Species: Mycobacterium kumamotonense

Strain Designation: CST 7247

Culture col. no.: DSM 45093, CCUG 51961, GTC 2729, JCM 13453

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	31-03-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Actinobacteria
	Class	Actinobacteria
	Order	Corynebacteriales
	Family	Mycobacteriaceae
	Genus	Mycobacterium
	Species	Mycobacterium kumamotonense
	Full Scientific Name (PNU)	Mycobacterium kumamotonense Masaki et al. 2007

Synonym

Mycolicibacter kumamotonensis

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #59384]

Incubation period

7-10 days

[Ref.: #12335]	Multimedia content
[Ref.: #12335]	Caption	Medium 645 37°C
[Ref.: #12335]	License/Copyright	(C) Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
[Ref.: #12335]	Intellectual property rights	© Leibniz-Institut DSMZ

[Ref.: #59384]	Oxygen tolerance	aerobe
[Ref.: #59384]	Oxygen tolerance	microaerophile

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #12335]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #12335]

Culture medium growth

[Ref.: #12335]

Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #12335]			growth	37 ̊C
[Ref.: #59384]			growth	35 ̊C

[Ref.: #12335]	Temperature range	mesophilic
[Ref.: #59384]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #12335]

Sample type/isolated from

sputa of a 57-year old Japanes woman

[Ref.: #12335]

Geographic location (country and/or sea, region)

Kumamoto Prefecture

[Ref.: #12335]

Country

Japan

[Ref.: #12335]

Country ISO 3 Code

JPN

[Ref.: #12335]

Continent

Asia

[Ref.: #59384]

Sample type/isolated from

Human sputum,57-yr-old female Japanese

[Ref.: #59384]

Sampling date

2001

[Ref.: #59384]

Geographic location (country and/or sea, region)

Kumamoto

[Ref.: #59384]

Country

Japan

[Ref.: #59384]

Country ISO 3 Code

JPN

[Ref.: #59384]

Continent

Asia

Isolation sources categories

#Host	#Human	#Female
#Host Body Product	#Fluids	#Sputum

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #12335]	Pathogenicity (human)	yes
[Ref.: #12335]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #12335]

GC-content

51.19 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Mycobacterium kumamotonense dnaJ1 gene for DnaJ, complete cds, strain: GTC 2729	AB292545 ENA		1194	354243 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium kumamotonense strain CCUG 51961 16S ribosomal RNA gene, partial sequence	EU191911 ENA	16S	471	354243 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium kumamotonense strain CCUG 51961 65 kDa heat shock protein (hsp65) gene, partial cds	EU191915 ENA		370	354243 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium kumamotonense strain CCUG 51961 RNA polymerase (rpoB) gene, partial cds	EU191925 ENA		356	354243 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium kumamotonense strain CCUG 51961 superoxide dismutase (sodA) gene, partial cds	EU191933 ENA		379	354243 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium kumamotonense strain CCUG 51961 tmRNA (ssrA) gene, partial sequence	EU191936 ENA		330	354243 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium kumamotonense strain CCUG 51961 elongation factor Tu (tuf) gene, partial cds	EU191945 ENA		647	354243 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium kumamotonense strain JCM 13453 heat shock protein gene, partial cds	GQ214502 ENA		603	354243 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium kumamotonense strain DSM 45093 GroEL (hsp65) gene, partial cds	JF491323 ENA		401	354243 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium kumamotonense strain DSM45093 16S ribosomal RNA gene, partial sequence	JN571176 ENA	16S	479	354243 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium kumamotonense strain DSM45093 65 kDa heat shock protein (hsp65) gene, partial cds	JN571202 ENA		399	354243 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium kumamotonense strain FI-10008 65 kDa heat shock protein (hsp65) gene, partial cds	JN571203 ENA		399	354243 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Mycobacterium kumamotonense strain DSM45093 RNA polymerase beta subunit (rpoB) gene, partial cds	JN571251 ENA		719	354243 tax ID	*
[Ref.: #12335]	Marker Gene (DDBJ Direct submission)	Mycobacterium kumamotonense gene for 16S rRNA, partial sequence, strain:CST7274 (= GTC2729)	AB239925 ENA	16S	1434	354243 tax ID

Availability in culture collectionsStrain availability

[Ref.: #12335]

Culture collection no.

DSM 45093, CCUG 51961, GTC 2729, JCM 13453

[Ref.: #12335]

Strain history

<- JCM <- T. Ezaki; CST 7247

[Ref.: #20218]

Associated Passport(s) in StrainInfo

719001, 690106, 699726, 690107

References

#12335

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45093

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#59384 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51961
* These References are textmined

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Mycobacterium kumamotonense in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF