Mycobacterium kumamotonense | Type strain | DSM 45093, CCUG 51961, GTC 2729, JCM 13453, CST 7247

Strain identifier

BacDive ID: 8555

Type strain:

Species: Mycobacterium kumamotonense

Culture col. no.: DSM 45093, CCUG 51961, GTC 2729, JCM 13453, CST 7247

Strain history: <- JCM <- T. Ezaki; CST 7247

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Mycobacterium kumamotonense DSM 45093 is an aerobe, mesophilic human pathogen that was isolated from sputa of a 57-year old Japanes woman.

aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Actinobacteria
	Class	Actinobacteria
	Order	Mycobacteriales
	Family	Mycobacteriaceae
	Genus	Mycobacterium
	Species	Mycobacterium kumamotonense
	Full Scientific Name (PNU)	Mycobacterium kumamotonense Masaki et al. 2007

Synonym

Mycolicibacter kumamotonensis

Information on morphological and physiological propertiesMorphology

[Ref.: #59384]

Incubation period

7-10 days

Multimedia content

[Ref.: #12335]

Caption:

Medium 645 37°C

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License/Copyright:

[Ref.: #12335]

Intellectual property rights:

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #12335]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

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Culture medium growth

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Culture medium link

medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #12335]			growth	37 ̊C
[Ref.: #59384]			growth	35 ̊C

[Ref.: #12335]	Temperature range	mesophilic
[Ref.: #59384]	Temperature range	mesophilic

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #59384]	Oxygen tolerance	aerobe
[Ref.: #59384]	Oxygen tolerance	microaerophile

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #12335]	Sample type/isolated from	sputa of a 57-year old Japanes woman
[Ref.: #12335]	Geographic location (country and/or sea, region)	Kumamoto Prefecture
[Ref.: #12335]	Country	Japan
[Ref.: #12335]	Country ISO 3 Code	JPN
[Ref.: #12335]	Continent	Asia

[Ref.: #59384]	Sample type/isolated from	Human sputum,57-yr-old female Japanese
[Ref.: #59384]	Sampling date	2001
[Ref.: #59384]	Geographic location (country and/or sea, region)	Kumamoto
[Ref.: #59384]	Country	Japan
[Ref.: #59384]	Country ISO 3 Code	JPN
[Ref.: #59384]	Continent	Asia

Isolation sources categories

#Host	#Human	#Female
#Host Body Product	#Fluids	#Sputum

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #12335]	Pathogenicity (human)	yes
[Ref.: #12335]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Mycobacterium kumamotonense strain CCUG 51961 16S ribosomal RNA gene, partial sequence	EU191911	471	ENA	354243 tax ID	*
[Ref.: #20218]	Mycobacterium kumamotonense strain DSM45093 16S ribosomal RNA gene, partial sequence	JN571176	479	ENA	354243 tax ID	*
[Ref.: #12335]	Mycobacterium kumamotonense gene for 16S rRNA, partial sequence, strain:CST7274 (= GTC2729)	AB239925	1434	ENA	354243 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycolicibacter kumamotonensis DSM 45093	GCA_002086285	contig	GenBank	354243 tax ID	*
[Ref.: #66792]	Mycolicibacter kumamotonensis CST 7247	GCA_010093495	scaffold	GenBank	354243 tax ID	*
[Ref.: #66792]	Mycolicibacter kumamotonensis Roo	GCA_001679965	scaffold	GenBank	354243 tax ID	*
[Ref.: #66792]	Mycobacterium kumamotonense strain DSM 45093	354243.4	wgs	PATRIC	354243 tax ID	*
[Ref.: #66792]	Mycobacterium kumamotonense strain Roo	354243.3	wgs	PATRIC	354243 tax ID	*

[Ref.: #12335]

GC-content

51.19 mol%

Availability in culture collectionsExternal links

[Ref.: #12335]

Culture collection no.

DSM 45093, CCUG 51961, GTC 2729, JCM 13453, CST 7247

[Ref.: #20218]

Associated Passport(s) in StrainInfo

719001, 690106, 699726, 690107

References

#12335

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45093

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#59384 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51961

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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