Mycobacterium salmoniphilum (DSM 43276, ATCC 13758, CCUG 56311)

Name: Mycobacterium salmoniphilum (DSM 43276, ATCC 13758, CCUG 56311)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8291

Type strain

Strain Designation 214, SC

Culture col. no. DSM 43276 ATCC 13758 CCUG 56311 214 SC

NCBI tax ID(s) 404941

Special Collections DSMZ CCUG

History <- K. Kieslich, Schering 214 <- ATCC (Mycobacterium salmoniphilum) <- A.J. Ross, strain Spring Creek

Links

Mycobacterium salmoniphilum 214 is an animal pathogen that was isolated from adult chinook salmon kidney.

animal pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 343344

ATCC 13758,DSM 43276,NCIMB 1300,NCMB1490,CCUG 56311

@ref 20215

Last LPSN update 2026-02-09 11:19:40

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium salmoniphilum

Full scientific name Mycobacterium salmoniphilum (ex Ross 1960) Whipps et al. 2007

Synonyms (2)

"Mycobacterium salmoniphilum"
Mycobacteroides salmoniphilum

BacDive ID	Other strains from **Mycobacterium salmoniphilum** (4)	Type strain
156257	M. salmoniphilum CCUG 60883
156258	M. salmoniphilum CCUG 60884
156259	M. salmoniphilum CCUG 60885
156703	M. salmoniphilum CCUG 64234

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		92
125438		90.321	positive

Multimedia

@ref:	10920
multimedia content:	DSM_43276.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_43276.jpg
caption:	Medium 645 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
10920	MIDDLEBROOK MEDIUM (DSMZ Medium 645)		Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
10920	MYCOBACTERIUM MEDIUM (DSMZ Medium 219)		Medium recipe at MediaDive	Name: MYCOBACTERIUM MEDIUM (DSMZ Medium 219) Composition: Agar 20.0 g/l Na2HPO4 x 12 H2O 2.5 g/l Yeast extract 2.0 g/l Proteose peptone no. 3 2.0 g/l Casein peptone 2.0 g/l Sodium citrate 1.5 g/l KH2PO4 1.0 g/l MgSO4 x 7 H2O 0.6 g/l Tween 0.5 g/l Glycerol Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
10920	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Fishes	#Salmonidae
#Host Body-Site	#Urogenital tract	#Kidney

Isolation

@ref	Sample type
10920	adult chinook salmon kidney
60914	Adult chinook salmon kidney

Taxonmaps

69479

Global distribution of 16S sequence DQ866768 (>99% sequence identity) for Mycobacteroides from Microbeatlas

Aquatic Samples	6199
Soil Samples	7046
Animal Samples	7007
Plant Samples	1742
Total Samples	21994

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
10920		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM492433v1 assembly for Mycobacteroides salmoniphilum DSM 43276	complete	GCA_004924335	404941.17	2851850490	404941	99.22
66792	ASM201368v1 assembly for Mycobacteroides salmoniphilum SC	contig	GCA_002013685	404941.6	2862123791	404941	64.69

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Mycobacterium salmoniphilum strain ATCC 13758 16S small subunit ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S large subunit ribosomal RNA gene, partial sequence	DQ866768	1956		404941

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycobacteroides salmoniphilum strain DSM 43276
PATRIC: 404941.17

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	82.70	no
125439	motility	BacteriaNetⓘ	yes	59.30	no
125439	gram_stain	BacteriaNetⓘ	positive	66.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacteroides salmoniphilum DSM 43276
NCBI: GCA_004924335.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.32	no
125438	anaerobic	anaerobicⓘ	no	96.73	no
125438	aerobic	aerobicⓘ	yes	87.33	no
125438	spore-forming	spore-formingⓘ	no	60.55	no
125438	thermophilic	thermophileⓘ	no	95.90	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
Phylogeny	Microbiological features and clinical relevance of new species of the genus Mycobacterium.	Tortoli E.	Clin Microbiol Rev	10.1128/cmr.00035-14	2014
Genetics	Whole-Genome sequencing and comparative genomics of Mycobacterium spp. from farmed Atlantic and coho salmon in Chile.	Suarez R, Kusch K, Miranda CD, Li T, Campanini J, Behra PRK, Aro L, Martinez A, Godoy M, Medina DA.	Antonie Van Leeuwenhoek	10.1007/s10482-021-01592-w	2021
Phylogeny	Variation among human, veterinary and environmental Mycobacterium chelonae-abscessus complex isolates observed using core genome phylogenomic analysis, targeted gene comparison, and anti-microbial susceptibility patterns.	Fogelson SB, Camus AC, Lorenz WW, Vasireddy R, Vasireddy S, Smith T, Brown-Elliott BA, Wallace RJ, Hasan NA, Reischl U, Sanchez S.	PLoS One	10.1371/journal.pone.0214274	2019
Phylogeny	Mycobacterium salmoniphilum infection in farmed Atlantic salmon, Salmo salar L.	Zerihun MA, Nilsen H, Hodneland S, Colquhoun DJ	J Fish Dis	10.1111/j.1365-2761.2011.01293.x	2011
Phylogeny	Molecular systematics support the revival of Mycobacterium salmoniphilum (ex Ross 1960) sp. nov., nom. rev., a species closely related to Mycobacterium chelonae.	Whipps CM, Butler WR, Pourahmad F, Watral VG, Kent ML	Int J Syst Evol Microbiol	10.1099/ijs.0.64841-0	2007

References

#10920	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43276
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#60914	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56311
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium salmoniphilum (DSM 43276, ATCC 13758, CCUG 56311)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004924335

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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