Name: Micromonospora saelicesensis DSM 44871
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8001

Type strain:

Species: Micromonospora saelicesensis

Culture col. no.: DSM 44871, LMG 24056, NBRC 106573, NRRL B-24770, Lupac 09, JCM 16032

Strain history: LMG 24056 <-- M. E. Trujillo strain Lupac 09.

NCBI tax ID(s): 285676 (species)

SI-ID 297445

DSM 44871, LMG 24056, JCM 16032

Special Collections

Other strains from Micromonospora saelicesensis

Section

Micromonospora saelicesensis DSM 44871 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from root nodules of Lupinus angustifolius.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora saelicesensis**
	Full Scientific Name (LPSN)	Micromonospora saelicesensis Trujillo et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32250]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %92.41

[Ref.: #32250]

Pigment production

yes

Multimedia content

[Ref.: #12158]

Caption:

Medium 65 28°C

[Ref.: #12158]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12158]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #12158]

Culture medium growth

[Ref.: #12158]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12158]

Culture medium composition

expand / minimize

[Ref.: #12158]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12158]

Culture medium growth

[Ref.: #12158]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12158]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12158]	growth	28 °C
[Ref.: #32250]	growth	20-37 °C
[Ref.: #32250]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32250]

Oxygen tolerance

aerobe

[Ref.: #32250]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.747
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32250]		NaCl		optimum	2	%

[Ref.: #67770]

Observation

quinones: MK-10(H₄), MK-10(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32250]	arabinose ChEBI	+	carbon source
[Ref.: #32250]	cellobiose ChEBI	+	carbon source
[Ref.: #32250]	esculin ChEBI	+	hydrolysis
[Ref.: #32250]	galactose ChEBI	+	carbon source
[Ref.: #32250]	glucose ChEBI	+	carbon source
[Ref.: #32250]	histidine ChEBI	+	carbon source
[Ref.: #32250]	maltose ChEBI	+	carbon source
[Ref.: #32250]	mannitol ChEBI	+	carbon source
[Ref.: #32250]	mannose ChEBI	+	carbon source
[Ref.: #32250]	melibiose ChEBI	+	carbon source
[Ref.: #32250]	raffinose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32250]	acid phosphatase	+	3.1.3.2
[Ref.: #32250]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32250]	alpha-galactosidase	+	3.2.1.22
[Ref.: #32250]	catalase	+	1.11.1.6
[Ref.: #32250]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32250]	gelatinase	+
[Ref.: #32250]	pyrazinamidase	+	3.5.1.B15

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12158]	Sample type/isolated from	root nodules of Lupinus angustifolius
[Ref.: #12158]	Host species	Lupinus angustifolius
[Ref.: #12158]	Geographic location (country and/or sea, region)	Salamanca
[Ref.: #12158]	Country	Spain
[Ref.: #12158]	Country ISO 3 Code	ESP
[Ref.: #12158]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Surface-sterilized nitrogen-fixing nodule of Lupinus angustifolius
[Ref.: #67770]	Host species	Lupinus angustifolius
[Ref.: #67770]	Geographic location (country and/or sea, region)	Salamanca
[Ref.: #67770]	Country	Spain
[Ref.: #67770]	Country ISO 3 Code	ESP
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ783993 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	161
Soil Samples	1017
Animal Samples	219
Plant Samples	22
Total Samples	1419

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12158]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12158]	Micromonospora saelicesensis partial 16S rRNA gene, type strain Lupac 09T	AJ783993	1509	GenBank ENA	285676 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Micromonospora saelicesensis DSM 44871	GCA_900091575	scaffold	GenBank ENA	285676 tax ID
[Ref.: #66792]	Micromonospora saelicesensis strain DSM 44871	285676.40	wgs	PATRIC	285676 tax ID	*
[Ref.: #66792]	Micromonospora saelicesensis DSM 44871	2622736537	draft	JGI IMG/M	285676 tax ID	*

[Ref.: #12158]	GC-content	71.6 mol%
[Ref.: #67770]	GC-content	71.15 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	71.6 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micromonospora saelicesensis DSM 44871 NCBI: GCA_900091575.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora saelicesensis strain DSM 44871 PATRIC: 285676.40
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.41	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.435	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.747	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.267	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	no

Availability in culture collections External links

[Ref.: #12158]

Culture collection no.

DSM 44871, LMG 24056, NBRC 106573, NRRL B-24770, Lupac 09, JCM 16032

[Ref.: #77431]

SI-ID 297445

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Defining the Species Micromonospora saelicesensis and Micromonospora noduli Under the Framework of Genomics.	Riesco R, Carro L, Roman-Ponce B, Prieto C, Blom J, Klenk HP, Normand P, Trujillo ME	Front Microbiol	10.3389/fmicb.2018.01360	2018	*
Phylogeny	Micromonospora parathelypteridis sp. nov., an endophytic actinomycete with antifungal activity isolated from the root of Parathelypteris beddomei (Bak.) Ching.	Zhao S, Liu C, Zheng W, Ma Z, Cao T, Zhao J, Yan K, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001614	2017	*
Phylogeny	Micromonospora lycii sp. nov., a novel endophytic actinomycete isolated from wolfberry root (Lycium chinense Mill).	Zhao J, Guo L, Liu C, Zhang Y, Guan X, Li J, Xu S, Xiang W, Wang X	J Antibiot (Tokyo)	10.1038/ja.2015.109	2015	*
Phylogeny	Micromonospora zeae sp. nov., a novel endophytic actinomycete isolated from corn root (Zea mays L.).	Shen Y, Zhang Y, Liu C, Wang X, Zhao J, Jia F, Yang L, Yang D, Xiang W	J Antibiot (Tokyo)	10.1038/ja.2014.54	2014	*
Phylogeny	Micromonospora violae sp. nov., isolated from a root of Viola philippica Car.	Zhang Y, Liu H, Zhang X, Wang S, Liu C, Yu C, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0184-6	2014	*
Phylogeny	Micromonospora jinlongensis sp. nov., isolated from muddy soil in China and emended description of the genus Micromonospora.	Gao R, Liu C, Zhao J, Jia F, Yu C, Yang L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-013-0074-3	2013	*
Phylogeny	Micromonospora cremea sp. nov. and Micromonospora zamorensis sp. nov., isolated from the rhizosphere of Pisum sativum.	Carro L, Pukall R, Sproer C, Kroppenstedt RM, Trujillo ME	Int J Syst Evol Microbiol	10.1099/ijs.0.038695-0	2012	*
Phylogeny	Micromonospora lupini sp. nov. and Micromonospora saelicesensis sp. nov., isolated from root nodules of Lupinus angustifolius.	Trujillo ME, Kroppenstedt RM, Fernandez-Molinero C, Schumann P, Martinez-Molina E	Int J Syst Evol Microbiol	10.1099/ijs.0.65192-0	2007	*

References

#12158

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44871

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32250

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28491 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77431

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297445.1 )

#28491

IJSEM 2799 2007 ( DOI 10.1099/ijs.0.65192-0 , PubMed 18048727 )

* These data were automatically processed and therefore are not curated

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Micromonospora saelicesensis DSM 44871

Micromonospora saelicesensis strain DSM 44871

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