Micromonospora saelicesensis (DSM 44871, LMG 24056, NBRC 106573)

Name: Micromonospora saelicesensis (DSM 44871, LMG 24056, NBRC 106573)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8001

Type strain

Culture col. no. DSM 44871 LMG 24056 NBRC 106573 NRRL B-24770 Lupac 09 1 more

NCBI tax ID(s) 285676

Special Collections DSMZ JCM Literature strains

History DSMZ <- M. E. Trujillo; Lupac 09 JCM <-- LMG 24056 <-- M. E. Trujillo strain Lupac 09.

Links

Micromonospora saelicesensis DSM 44871 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from root nodules of Lupinus angustifolius.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297445

NBRC 106573,DSM 44871,LMG 24056,JCM 16032

@ref 20215

Last LPSN update 2026-05-29 08:26:46

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora saelicesensis

Full scientific name Micromonospora saelicesensis Trujillo et al. 2007

BacDive ID	Other strains from **Micromonospora saelicesensis** (5)	Type strain
7999	M. saelicesensis DSM 44868, Lupac 06
8000	M. saelicesensis DSM 44869, Lupac 07
8002	M. saelicesensis ES-146, DSM 30764
160647	M. saelicesensis 4/2/0.5/20, DSM 43702
176915	M. saelicesensis 14/1000/c/1, DSM 43745

Morphology

Cell morphology

@ref	Gram stain	Confidence
32250	positive
125439	positive	98.57
125438	positive	92.41

Pigmentation

32250

Productionyes

Multimedia

@ref:	12158
multimedia content:	DSM_44871.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44871.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12158	N-Z-AMINE-MEDIUM (DSMZ Medium 554)		Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
12158	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
12158	positive	growth	28
32250	positive	growth	20-37
32250	positive	optimum	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32250	aerobe
125439	obligate aerobe	99.584

Spore formation

@ref	Spore formation	Confidence
32250
125438		93.747

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32250	NaCl	positive	optimum	2 %

Observation

67770

Observationquinones: MK-10(H₄), MK-10(H₆)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32250	22599 ChEBI	arabinose	+	carbon source
32250	17057 ChEBI	cellobiose	+	carbon source
32250	4853 ChEBI	esculin	+	hydrolysis
32250	28260 ChEBI	galactose	+	carbon source
32250	17234 ChEBI	glucose	+	carbon source
32250	27570 ChEBI	histidine	+	carbon source
32250	17306 ChEBI	maltose	+	carbon source
32250	29864 ChEBI	mannitol	+	carbon source
32250	37684 ChEBI	mannose	+	carbon source
32250	28053 ChEBI	melibiose	+	carbon source
32250	16634 ChEBI	raffinose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32250	acid phosphatase	+	3.1.3.2
32250	alkaline phosphatase	+	3.1.3.1
32250	alpha-galactosidase	+	3.2.1.22
32250	catalase	+	1.11.1.6
32250	cytochrome oxidase	+	1.9.3.1
32250	gelatinase	+
32250	pyrazinamidase	+	3.5.1.B15

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
12158	root nodules of Lupinus angustifolius	Lupinus angustifolius	Salamanca	Spain	ESP	Europe
67770	Surface-sterilized nitrogen-fixing nodule of Lupinus angustifolius	Lupinus angustifolius	Salamanca	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ783993 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	161
Soil Samples	1017
Animal Samples	219
Plant Samples	22
Total Samples	1419

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12158	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2622736537 annotated assembly for Micromonospora saelicesensis DSM 44871	scaffold	GCA_900091575	285676.40	2622736537	285676	74.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12158	Micromonospora saelicesensis partial 16S rRNA gene, type strain Lupac 09T	AJ783993	1509		285676

GC content

@ref	GC-content (mol%)	Method
12158	71.6
67770	71.15	genome sequence analysis
67770	71.6	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2622736537 annotated assembly for Micromonospora saelicesensis DSM 44871
NCBI: GCA_900091575

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.58	no
125439	gram_stain	BacteriaNetⓘ	positive	98.57	no
125439	motility	BacteriaNetⓘ	no	88.69	no
125439	spore_formation	BacteriaNetⓘ	yes	65.94	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora saelicesensis strain DSM 44871
PATRIC: 285676.40

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.41	no
125438	anaerobic	anaerobicⓘ	no	95.44	no
125438	spore-forming	spore-formingⓘ	yes	93.75	yes
125438	aerobic	aerobicⓘ	yes	89.27	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Enhancing La(III) biosorption and biomineralization with Micromonospora saelicesensis: Involvement of phosphorus and formation of monazite nano-minerals.	Zhang Y, Wang L, Liu X, Cao C, Yao J, Ma Z, Shen Q, Chen Q, Liu J, Li R, Jiang J.	Sci Total Environ	10.1016/j.scitotenv.2023.169851	2024
Biotechnology	GC/MS Fatty Acid Profile of Marine-Derived Actinomycetes from Extreme Environments: Chemotaxonomic Insights and Biotechnological Potential.	Cunha MB, Jorge AF, Nunes MJ, Sousa JR, Lanca MJ, Gomes da Silva M, Gaudencio SP.	Mar Drugs	10.3390/md23010001	2024
	Induced systemic resistance against Botrytis cinerea by Micromonospora strains isolated from root nodules.	Martinez-Hidalgo P, Garcia JM, Pozo MJ.	Front Microbiol	10.3389/fmicb.2015.00922	2015
Genetics	Karakum desert: a unique source of cultivable novel and rare actinomycetes with a remarkable biosynthetic potential.	Saygin H, Sahin N, Goodfellow M.	World J Microbiol Biotechnol	10.1007/s11274-025-04399-3	2025
	Testing the Luedemann hypothesis: the discovery of novel antimicrobials from slow-growing microbes from nutrient-limited environments.	Lin B, Woo S, Philbrick A, Bacsa J, Laskey E, Mehra N, Gondil VS, Mei JA, Jones G, Pavelka MS, Dziejman M, Shutter DA, Melander C, Perritt AM, Jakober R, Shen Y, Chang W-C, Quave CL, Dunman PM, Luedemann G.	mSphere	10.1128/msphere.00367-25	2025
Phylogeny	Micromonospora is a normal occupant of actinorhizal nodules.	Carro L, Pujic P, Trujillo ME, Normand P.	J Biosci	10.1007/s12038-013-9359-y	2013
	Phylogenetic and Physiological Diversity of Cultivable Actinomycetes Isolated From Alpine Habitats on the Qinghai-Tibetan Plateau.	Ma A, Zhang X, Jiang K, Zhao C, Liu J, Wu M, Wang Y, Wang M, Li J, Xu S.	Front Microbiol	10.3389/fmicb.2020.555351	2020
Phylogeny	Diversity of Culturable Bacteria Isolated from Highland Barley Cultivation Soil in Qamdo, Tibet Autonomous Region.	Pan HU, Zhou J, Dawa Z, Dai Y, Zhang Y, Yang H, Wang C, Liu H, Zhou H, Lu X, Tian Y.	Pol J Microbiol	10.33073/pjm-2021-008	2021
	Insights into the phylogenetic diversity, biological activities, and biosynthetic potential of mangrove rhizosphere Actinobacteria from Hainan Island.	Ye JJ, Zou RJ, Zhou DD, Deng XL, Wu NL, Chen DD, Xu J.	Front Microbiol	10.3389/fmicb.2023.1157601	2023
	Endophytic Actinobacteria and the Interaction of Micromonospora and Nitrogen Fixing Plants.	Trujillo ME, Riesco R, Benito P, Carro L.	Front Microbiol	10.3389/fmicb.2015.01341	2015
Phylogeny	Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential.	Carro L, Nouioui I, Sangal V, Meier-Kolthoff JP, Trujillo ME, Montero-Calasanz MDC, Sahin N, Smith DL, Kim KE, Peluso P, Deshpande S, Woyke T, Shapiro N, Kyrpides NC, Klenk HP, Goker M, Goodfellow M.	Sci Rep	10.1038/s41598-017-17392-0	2018
Genetics	Genome features of the endophytic actinobacterium Micromonospora lupini strain Lupac 08: on the process of adaptation to an endophytic life style?	Trujillo ME, Bacigalupe R, Pujic P, Igarashi Y, Benito P, Riesco R, Medigue C, Normand P.	PLoS One	10.1371/journal.pone.0108522	2014
Genetics	Defining the Species Micromonospora saelicesensis and Micromonospora noduli Under the Framework of Genomics.	Riesco R, Carro L, Roman-Ponce B, Prieto C, Blom J, Klenk HP, Normand P, Trujillo ME	Front Microbiol	10.3389/fmicb.2018.01360	2018
	Micromonospora parastrephiae sp. nov. and Micromonospora tarensis sp. nov., isolated from the rhizosphere of a Parastrephia quadrangularis plant growing in the Salar de Tara region of the Central Andes in Chile.	Razmilic V, Nouioui I, Karlyshev A, Jawad R, Trujillo ME, Igual JM, Andrews BA, Asenjo JA, Carro L, Goodfellow M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006189	2023
	Taxonomic description of Micromonospora reichwaldensis sp. nov. and its biosynthetic and plant growth-promoting potential.	Nouioui I, Zimmermann A, Gomez Escribano JP, Jando M, Potter G, Neumann-Schaal M, Mast Y.	Microbiol Spectr	10.1128/spectrum.02129-24	2025
Phylogeny	Micromonospora profundi sp. nov., isolated from deep marine sediment.	Veyisoglu A, Carro L, Cetin D, Guven K, Sproer C, Potter G, Klenk HP, Sahin N, Goodfellow M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.001419	2016
	Micromonospora luteifusca sp. nov. isolated from cultivated Pisum sativum.	Carro L, Riesco R, Sproer C, Trujillo ME.	Syst Appl Microbiol	10.1016/j.syapm.2016.04.003	2016
Phylogeny	Micromonospora parathelypteridis sp. nov., an endophytic actinomycete with antifungal activity isolated from the root of Parathelypteris beddomei (Bak.) Ching.	Zhao S, Liu C, Zheng W, Ma Z, Cao T, Zhao J, Yan K, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001614	2017
Phylogeny	Micromonospora lycii sp. nov., a novel endophytic actinomycete isolated from wolfberry root (Lycium chinense Mill).	Zhao J, Guo L, Liu C, Zhang Y, Guan X, Li J, Xu S, Xiang W, Wang X	J Antibiot (Tokyo)	10.1038/ja.2015.109	2015
Phylogeny	Micromonospora zeae sp. nov., a novel endophytic actinomycete isolated from corn root (Zea mays L.).	Shen Y, Zhang Y, Liu C, Wang X, Zhao J, Jia F, Yang L, Yang D, Xiang W	J Antibiot (Tokyo)	10.1038/ja.2014.54	2014
Phylogeny	Micromonospora violae sp. nov., isolated from a root of Viola philippica Car.	Zhang Y, Liu H, Zhang X, Wang S, Liu C, Yu C, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-014-0184-6	2014
Phylogeny	Micromonospora jinlongensis sp. nov., isolated from muddy soil in China and emended description of the genus Micromonospora.	Gao R, Liu C, Zhao J, Jia F, Yu C, Yang L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-013-0074-3	2013
Phylogeny	Micromonospora cremea sp. nov. and Micromonospora zamorensis sp. nov., isolated from the rhizosphere of Pisum sativum.	Carro L, Pukall R, Sproer C, Kroppenstedt RM, Trujillo ME	Int J Syst Evol Microbiol	10.1099/ijs.0.038695-0	2012
Phylogeny	Micromonospora lupini sp. nov. and Micromonospora saelicesensis sp. nov., isolated from root nodules of Lupinus angustifolius.	Trujillo ME, Kroppenstedt RM, Fernandez-Molinero C, Schumann P, Martinez-Molina E	Int J Syst Evol Microbiol	10.1099/ijs.0.65192-0	2007

References

#12158	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44871
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28491	IJSEM 2799 2007 ( DOI 10.1099/ijs.0.65192-0 , PubMed 18048727 )
#32250	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28491
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora saelicesensis (DSM 44871, LMG 24056, NBRC 106573)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900091575

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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