Catenuloplanes japonicus (DSM 44102, ATCC 31637, IFO 14176)

Name: Catenuloplanes japonicus (DSM 44102, ATCC 31637, IFO 14176)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7860

Type strain

Culture col. no. DSM 44102 ATCC 31637 IFO 14176 NBRC 14176 JCM 9106 10 more

NCBI tax ID(s) 1307447 33876

Special Collections DSMZ JCM JMRC

History DSMZ <- IFO <- ATCC <- Chas. Pfizer Inc., L. H. Huang, N 381-16 JCM <-- IFO 14176 <-- ATCC 31637 <-- Pfizer, Inc.; FD 26347 <-- L. H. Huang N381-16.

Links

Catenuloplanes japonicus DSM 44102 is a bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 40165

ATCC 31637,IFO 14176,DSM 44102,JCM 9106,VKM Ac-875,NCIMB 13394,NBRC 14176,NRRL B-16061,CGMCC 4.2096

@ref 20215

Last LPSN update 2026-05-29 08:26:44

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Catenuloplanes

Species Catenuloplanes japonicus

Full scientific name Catenuloplanes japonicus Yokota et al. 1993

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		90.831
125439		99.435	positive

Multimedia

@ref:	11398
multimedia content:	DSM_44102-1.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44102-1.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	11398
multimedia content:	DSM_44102.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44102.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
11398	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
11398	N-Z-AMINE-MEDIUM (DSMZ Medium 554)		Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
11398	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.365

Compound production

@ref	Compound
11398	antibiotics CP-54715 and CP-54716
11398	CP-54715
11398	CP-54716
11398	restriction endonuclease CjaI

Observation

67770

Observationquinones: MK-10(H₄), MK-10(H₂), MK-11(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
11398	soil	Japan	JPN	Asia
67770	Soil	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11398	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM71713v1 assembly for Catenuloplanes japonicus NRRL B-16061	contig	GCA_000717135	33876.3	2772190661	33876	49.9
66792	ASM131552v1 assembly for Catenuloplanes japonicus JCM 9106	contig	GCA_001315525	1307447.5	2734481992	1307447	0

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Catenuloplanes japonicus 16S rRNA gene, type strain DSM 44102T	AJ865470	1453	1307447
20218	C.japonicus 16S rRNA gene	X93201	1453	1307447
20218	Catenuloplanes japonicus IFO14176 gene for 16S rRNA, partial sequence	D14642	1264	1307447
20218	Catenuloplanes japonicus gene for 16S ribosomal RNA, partial sequence	D85476	1443	1307447

GC content

@ref	GC-content (mol%)	Method
67770	70	high performance liquid chromatography (HPLC)
67770	71	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM71713v1 assembly for Catenuloplanes japonicus NRRL B-16061
NCBI: GCA_000717135

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.37	no
125439	gram_stain	BacteriaNetⓘ	positive	99.44	no
125439	motility	BacteriaNetⓘ	no	90.83	no
125439	spore_formation	BacteriaNetⓘ	yes	88.06	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Catenuloplanes japonicus JCM 9106
PATRIC: 1307447.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	75.33	no
125438	anaerobic	anaerobicⓘ	no	93.34	no
125438	spore-forming	spore-formingⓘ	yes	61.50	no
125438	aerobic	aerobicⓘ	yes	79.30	no
125438	thermophilic	thermophileⓘ	no	90.63	no
125438	flagellated	motile2+ⓘ	no	71.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Real-time PCR for the detection and quantification of geodermatophilaceae from stone samples and identification of new members of the genus blastococcus.	Salazar O, Valverde A, Genilloud O.	Appl Environ Microbiol	10.1128/aem.72.1.346-352.2006	2006
	Identification of a putative cell wall-hydrolyzing amidase involved in sporangiospore maturation in Actinoplanes missouriensis.	Tan Z, Tezuka T, Ohnishi Y.	J Bacteriol	10.1128/jb.00456-23	2024
Phylogeny	Distribution and phylogenetic analysis of family 19 chitinases in Actinobacteria.	Kawase T, Saito A, Sato T, Kanai R, Fujii T, Nikaidou N, Miyashita K, Watanabe T.	Appl Environ Microbiol	10.1128/aem.70.2.1135-1144.2004	2004
Enzymology	Expression of thermophilic two-domain laccase from Catenuloplanes japonicus in Escherichia coli and its activity against triarylmethane and azo dyes.	Trubitsina LI, Abdullatypov AV, Larionova AP, Trubitsin IV, Alferov SV, Ponamoreva ON, Leontievsky AA.	PeerJ	10.7717/peerj.11646	2021
	Functionalization of MWCNTs for Bioelectrocatalysis by Bacterial Two-Domain Laccase from Catenuloplanes japonicus.	Abdullatypov A, Oskin P, Fedina V, Trubitsina L, Yakimovich S, Shuvalova E, Verma P, Dyachkova T, Ponamoreva O, Alferov S.	Nanomaterials (Basel)	10.3390/nano13233019	2023
Enzymology	Bioelectrocatalyst for O₂ Reduction Based on a Novel Recombinant Two-Domain Laccase from Streptomyces ochraceisleroticus Immobilized on Naphthyl-Modified MWCNTs.	Trubitsina L, Egorov K, Abdullatypov A, Petrakova M, Trubitsin I, Alferov S, Leontievsky A, Ponamoreva O.	Int J Mol Sci	10.3390/ijms26189143	2025
	Molecular mechanism of flagellar motor rotation arrest in bacterial zoospores of Actinoplanes missouriensis before germination.	Kato H, Tanemura H, Kimura T, Katsuyama Y, Tezuka T, Ohnishi Y.	Commun Biol	10.1038/s42003-024-07104-6	2024
	The ssgB gene is required for the early stages of sporangium formation in Actinoplanes missouriensis.	Akutsu T, Tezuka T, Maruko M, Hirata A, Ohnishi Y.	J Bacteriol	10.1128/jb.00428-23	2024
Enzymology	Identification and Characterization of a Cell Wall Hydrolase for Sporangiospore Maturation in Actinoplanes missouriensis.	Mitsuyama K, Tezuka T, Ohnishi Y.	J Bacteriol	10.1128/jb.00519-19	2019
Metabolism	Characterization of Zoospore Type IV Pili in Actinoplanes missouriensis.	Kimura T, Tezuka T, Nakane D, Nishizaka T, Aizawa SI, Ohnishi Y.	J Bacteriol	10.1128/jb.00746-18	2019
Metabolism	Regulation of Sporangium Formation, Spore Dormancy, and Sporangium Dehiscence by a Hybrid Sensor Histidine Kinase in Actinoplanes missouriensis: Relationship with the Global Transcriptional Regulator TcrA.	Hashiguchi Y, Tezuka T, Mouri Y, Konishi K, Fujita A, Hirata A, Ohnishi Y.	J Bacteriol	10.1128/jb.00228-20	2020
Phylogeny	Widespread and persistent populations of a major new marine actinomycete taxon in ocean sediments.	Mincer TJ, Jensen PR, Kauffman CA, Fenical W.	Appl Environ Microbiol	10.1128/aem.68.10.5005-5011.2002	2002
Phylogeny	Verrucosispora gifhornensis gen. nov., sp. nov., a new member of the actinobacterial family Micromonosporaceae.	Rheims H, Schumann P, Rohde M, Stackebrandt E.	Int J Syst Bacteriol	10.1099/00207713-48-4-1119	1998

References

#11398	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44102
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the JMRC: Jena Microbial Resource Collection (JMRC):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Catenuloplanes japonicus (DSM 44102, ATCC 31637, IFO 14176)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Compound production

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000717135

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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