Name: Kocuria sp. CNJ787
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7652

Type strain:

Species: Kocuria sp.

Strain Designation: CNJ787

Culture col. no.: DSM 17356

Strain history: <- P. Jensen, Scripps Inst. Oceanography, Univ. California, La Jolla, USA <- E. Gontang; CNJ787

NCBI tax ID(s): 1871328 (species)

SI-ID 407245

DSM 17356

Special Collections

DSMZ

Other strains from Kocuria sp.

Section

Kocuria sp. CNJ787 is a bacterium that was isolated from marine sediment.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Kocuria*
	Full Scientific Name (LPSN)	Kocuria Stackebrandt et al. 1995

Synonym

Pelczaria

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6932]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6932]

Culture medium growth

[Ref.: #6932]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6932]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6932]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6932]	Sample type/isolated from	marine sediment
[Ref.: #6932]	Geographic location (country and/or sea, region)	7°30'N 134°30'E, intertidal zone to depths of 500 m
[Ref.: #6932]	Country	Palau
[Ref.: #6932]	Country ISO 3 Code	PLW
[Ref.: #6932]	Continent	Australia and Oceania
[Ref.: #6932]	Geographic location	7.5000°/134.5000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ448773 (>99% sequence identity) for Kocuria flava subclade from Microbeatlas

Aquatic Samples	840
Soil Samples	1734
Animal Samples	2511
Plant Samples	897
Total Samples	5982

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6932]	Kocuria sp. CNJ787 PL04 16S ribosomal RNA gene, partial sequence	DQ448773	1494	GenBank ENA	378570 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kocuria sp. CNJ787	2561511136	draft	JGI IMG/M	1408307 tax ID	*

Availability in culture collections External links

[Ref.: #6932]

Culture collection no.

DSM 17356

[Ref.: #77096]

SI-ID 407245

References

#6932

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17356

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#77096

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407245.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Kocuria sp. in external resources:
SILVA
BRENDA
PANGAEA
GBIF