Pseudoglutamicibacter cumminsii (DSM 10493, ATCC 700218, CCM 4574)

Name: Pseudoglutamicibacter cumminsii (DSM 10493, ATCC 700218, CCM 4574)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7578

Type strain

Culture col. no. DSM 10493 ATCC 700218 CCM 4574 CCUG 36788 CIP 104907 3 more

NCBI tax ID(s) 156979

Special Collections DSMZ CCUG JCM KCTC CIP

History DSMZ <- G. Funke, DMMZ 445 CIP <- 1996, G. Funke, Inst. Med. Mikrobiol., Zürich, Switzerland: strain DMMZ 445 JCM <-- CCUG 36788 <-- G. Funke DMMZ 445. CIP <- 1996, G. Funke, Inst. Med. Mikrobiol., Zürich, Switzerland: strain DMMZ 445

Links

Pseudoglutamicibacter cumminsii DSM 10493 is an obligate aerobe, Gram-positive, rod-shaped bacterium that was isolated from urine.

Gram-positive rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 43830

ATCC 700218,DSM 10493,CCUG 36788,CIP 104907,CCM 4574,KCTC 9904,JCM 11675

@ref 20215

Last LPSN update 2026-05-29 08:26:41

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Pseudoglutamicibacter

Species Pseudoglutamicibacter cumminsii

Full scientific name Pseudoglutamicibacter cumminsii (Funke et al. 1997) Busse 2016

Synonyms (1)

Arthrobacter cumminsii

BacDive ID	Other strains from **Pseudoglutamicibacter cumminsii** (21)	Type strain
7579	P. cumminsii DSM 10494, CCUG 36789, DMMZ 483
139550	P. cumminsii U21003, CIP 105581, CCUG 28802
139551	P. cumminsii B51561, CIP 105582, CCUG 35241
145476	P. cumminsii CCUG 28647
145638	P. cumminsii CCUG 29118
147528	P. cumminsii CCUG 33745
148726	P. cumminsii CCUG 35863
150026	P. cumminsii CCUG 38876
150027	P. cumminsii CCUG 38877
150028	P. cumminsii CCUG 38878
150030	P. cumminsii CCUG 38880
150031	P. cumminsii CCUG 38881
150032	P. cumminsii CCUG 38882
150033	P. cumminsii CCUG 38883
150034	P. cumminsii CCUG 38884
150840	P. cumminsii CCUG 42541 B
151536	P. cumminsii CCUG 44254 A
153217	P. cumminsii CCUG 48780
154718	P. cumminsii CCUG 54962 B
155370	P. cumminsii CCUG 57490
175002	P. cumminsii 113717, DSM 113717

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
118813	positive	rod-shaped
125439			95.458
125439	positive		97.816
125438			94
125438	positive		91.514

Colony morphology

118813

Hemolysis ability1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3940	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
37308	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
118813	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
3940	positive	growth	30
37308	positive	growth	37
67770	positive	growth	37
118813	positive	growth	25-41
118813	negative	growth	10
118813	negative	growth	15
118813	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
118813	obligate aerobe
125439	obligate aerobe	97.55

Spore formation

@ref	Spore formation	Confidence
125439		96.306

Halophily

@ref	Salt	Growth	Tested relation	Concentration
118813	NaCl	positive	growth	0-10 %

Murein

@ref	Murein short key	Type
3940	A11.58	A4alpha L-Lys-L-Ser-L-Glu

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
118813	16947 ChEBI	citrate	-	carbon source
118813	4853 ChEBI	esculin	-	hydrolysis
118813	606565 ChEBI	hippurate	+	hydrolysis
118813	17632 ChEBI	nitrate	-	reduction
118813	17632 ChEBI	nitrate	-	respiration
118813	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
118813	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118813	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
118813	15688 ChEBI	acetoin	+
118813	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
118813	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
118813	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
118813	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118813	caseinase	+	3.4.21.50
118813	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
118813	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
118813	gamma-glutamyltransferase	-	2.3.2.2
118813	gelatinase	+/-
118813	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
118813	lipase	-
68382	lipase (C 14)	-		from API zym
118813	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118813	ornithine decarboxylase	-	4.1.1.17
118813	oxidase	+
118813	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
118813	tryptophan deaminase	-
118813	tween esterase	-
118813	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118813	-	-	+	+	-	+	-	+	+	-	+	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
118813	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Fluids	#Urine

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
3940	urine
53392	Human urine	Homo sapiens	Zürich	Switzerland	CHE	Europe
67770	Human urine	Homo sapiens	Zurich	Switzerland	CHE	Europe
118813	Human, Urine	Homo sapiens	Zurich	Switzerland	CHE	Europe

Taxonmaps

69479

Global distribution of 16S sequence X93354 (>99% sequence identity) for Pseudoglutamicibacter cumminsii from Microbeatlas

Aquatic Samples	793
Soil Samples	471
Animal Samples	11840
Plant Samples	163
Total Samples	13267

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3940	2	Risk group (German classification) According to TRBA 466
118813	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1690777v1 assembly for Pseudoglutamicibacter cumminsii DSM 10493	contig	GCA_016907775	156979.27	2893672949	156979	77.89

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
3940	Arthrobacter cumminsii 16S rRNA gene (strain 445)	X93354	1483		156979

GC content

@ref	GC-content (mol%)	Method
3940	61	high performance liquid chromatography (HPLC)
67770	60	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1690777v1 assembly for Pseudoglutamicibacter cumminsii DSM 10493
BV-BRC: 156979.27

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.55	no
125439	gram_stain	BacteriaNetⓘ	positive	97.82	no
125439	motility	BacteriaNetⓘ	no	95.46	no
125439	spore_formation	BacteriaNetⓘ	no	96.31	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudoglutamicibacter cumminsii strain DSM 10493
PATRIC: 156979.27

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.51	no
125438	anaerobic	anaerobicⓘ	no	89.89	yes
125438	spore-forming	spore-formingⓘ	no	86.00	no
125438	aerobic	aerobicⓘ	yes	81.22	yes
125438	thermophilic	thermophileⓘ	no	96.47	yes
125438	flagellated	motile2+ⓘ	no	94.00	no

Literature

References

#3940	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10493
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#37308	; Curators of the CIP;
#53392	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 36788
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118813	Collection of Institut Pasteur ; Curators of the CIP; CIP 104907
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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