Name: Glutamicibacter uratoxydans U-23
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7568

Type strain:

Species: Glutamicibacter uratoxydans

Strain Designation: U-23

Culture col. no.: DSM 20647, ATCC 21749, JCM 11944, BCRC 14857, CGMCC 1.2821, CIP 102367, FERM P-789, IFO 15515, KCTC 3482, LMG 16220, NBRC 15515, NCDO 2282, NCIMB 702282, VKM Ac-1979

Strain history: CIP <- 1986, DSM <- H. Seiler <- ATCC <- Noda Inst. Sci. Res.: strain U-23, Corynebacterium uratoxydans

NCBI tax ID(s): 43667 (species)

SI-ID 8193

LMG 16220, ATCC 21749, CIP 102367, DSM 20647, IFO 15515, NCFB 2282, NCDO 2282, NCIMB 702282, VKM Ac-1979, KCTC 3482, JCM 11944, NBRC 15515, BCRC 14857, CCRC 14857, CGMCC 1.2821

Other strains from Glutamicibacter uratoxydans

G. uratoxydans U-125, DSM 20648, ATCC 21752, CIP ...
G. uratoxydans STI09742(IMET), IFO 14480, INMI ...

Section

Glutamicibacter uratoxydans U-23 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from humus soil.

Gram-positive
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Glutamicibacter*
	Species	**Glutamicibacter uratoxydans**
	Full Scientific Name (LPSN)	Glutamicibacter uratoxydans (Stackebrandt et al. 1984) Busse 2016

Synonym

Arthrobacter uratoxydans

Information on morphological and physiological properties Morphology

[Ref.: #123737]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #123737]	Cell shape	rod-shaped

[Ref.: #123737]	Motility	yes

[Ref.: #18453]	Colony color	Colorless
[Ref.: #18453]	Incubation period	10-14 days
[Ref.: #18453]	Cultivation medium used	ISP 2

[Ref.: #18453]	Colony color	Colorless
[Ref.: #18453]	Incubation period	10-14 days
[Ref.: #18453]	Cultivation medium used	ISP 3

[Ref.: #18453]	Multicellular complex forming ability	no
[Ref.: #18453]	Medium Name (multicellularity)	ISP 2

[Ref.: #18453]	Multicellular complex forming ability	no
[Ref.: #18453]	Medium Name (multicellularity)	ISP 3

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18453]

Culture medium

ISP 2

[Ref.: #18453]

Culture medium growth

[Ref.: #18453]

Culture medium composition

expand / minimize

[Ref.: #18453]

Culture medium

ISP 3

[Ref.: #18453]

Culture medium growth

[Ref.: #18453]

Culture medium composition

expand / minimize

[Ref.: #41914]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #41914]

Culture medium growth

[Ref.: #41914]

Culture medium composition

expand / minimize

[Ref.: #8867]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #8867]

Culture medium growth

[Ref.: #8867]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8867]

Culture medium composition

expand / minimize

[Ref.: #123737]

Culture medium

CIP Medium 3

[Ref.: #123737]

Culture medium growth

[Ref.: #123737]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123737]

Culture medium

CIP Medium 72

[Ref.: #123737]

Culture medium growth

[Ref.: #123737]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8867]	growth	30 °C
[Ref.: #18453]	optimum	28 °C
[Ref.: #41914]	growth	25 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #8867]	Temperature range	mesophilic
[Ref.: #18453]	Temperature range	mesophilic
[Ref.: #41914]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123737]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.988

[Ref.: #8867]	Name of produced compound	uricase
[Ref.: #67770]	Name of produced compound	Uricase (US Pat. 3,767,533)

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18453]		NaCl		maximum	7.5	%

[Ref.: #8867]	Murein short key	A11.35
[Ref.: #8867]	Murein types	A4alpha L-Lys-L-Ala-L-Glu

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18453]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #18453]	fructose ChEBI	-
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #18453]	glucose ChEBI	-
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #18453]	mannitol ChEBI	-
[Ref.: #18453]	myo-inositol ChEBI	-
[Ref.: #123737]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #123737]	nitrite ChEBI	-	reduction
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18453]	raffinose ChEBI	-
[Ref.: #18453]	rhamnose ChEBI	-
[Ref.: #18453]	sucrose ChEBI	+
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E, API Coryne
[Ref.: #18453]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #123737]	indole ChEBI	no
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API 20E
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	+	3.2.1.31	* from API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123737]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #123737]	oxidase	-
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #123737]	urease	+	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne, API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18453]	40	-	-	-	-	+	-	+	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18453]	128	+	+	+	-	+	+	+	-	-	+	+	not determinedn.d.	-	-	-	+	+	-	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18453]	164	not determinedn.d.	+	+	+	-	+	+	+	-	-	+	+	-	-	-	+	+	-	+	-
[Ref.: #123737]	7038	-	+	+	+	+	+	+	+	+	-	+	+	-	-	-	+	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8867]	Sample type/isolated from	humus soil

[Ref.: #67770]	Sample type/isolated from	Humus soil

[Ref.: #123737]	Sample type/isolated from	Environment, Humus soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18453]	Biosafety level	1
[Ref.: #8867]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123737]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8867]	A.uratoxydans 16S rRNA gene	X83410	1484	ENA	43667 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Glutamicibacter uratoxydans NBRC 15515	GCA_006539925	contig	GenBank	43667 tax ID
[Ref.: #66792]	Glutamicibacter uratoxydans strain NBRC 15515	43667.3	wgs	PATRIC	43667 tax ID	*

[Ref.: #8867]	GC-content	61.2 mol%
[Ref.: #67770]	GC-content	61.2 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Glutamicibacter uratoxydans strain NBRC 15515 PATRIC: 43667.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Glutamicibacter uratoxydans strain NBRC 15515 PATRIC: 43667.3
[Ref.: #69480]	gram-positive	yes	92.323	no
[Ref.: #69480]	anaerobic	no	99.373	no
[Ref.: #69480]	halophile	no	53.843	no
[Ref.: #69480]	spore-forming	no	88.575	no
[Ref.: #69480]	glucose-util	yes	83.031	yes
[Ref.: #69480]	aerobic	yes	95.486	no
[Ref.: #69480]	flagellated	no	97.481	no
[Ref.: #69480]	thermophile	no	98.946	yes
[Ref.: #69480]	motile	no	94.839	no
[Ref.: #69480]	glucose-ferment	no	88.984	yes

Availability in culture collections External links

[Ref.: #8867]

Culture collection no.

DSM 20647, ATCC 21749, JCM 11944, BCRC 14857, CGMCC 1.2821, CIP 102367, FERM P-789, IFO 15515, KCTC 3482, LMG 16220, NBRC 15515, NCDO 2282, NCIMB 702282, VKM Ac-1979

[Ref.: #77013]

SI-ID 8193

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Structure of hexasaccharide 1-phosphate polymer from Arthrobacter uratoxydans VKM Ac-1979(T) cell wall.	Potekhina NV, Shashkov AS, Senchenkova SN, Dorofeeva LV, Evtushenko LI	Biochemistry (Mosc)	10.1134/S0006297912110089	2012	*

References

#8867

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20647

#18453

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41914 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77013

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID8193.1 )

#123737 Collection of Institut Pasteur ; Curators of the CIP; CIP 102367
* These data were automatically processed and therefore are not curated

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Glutamicibacter uratoxydans strain NBRC 15515

Glutamicibacter uratoxydans strain NBRC 15515

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