Name: Glutamicibacter protophormiae M-570
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7534

Type strain:

Species: Glutamicibacter protophormiae

Strain Designation: M-570

Culture col. no.: DSM 20168, ATCC 19271, CCEB 282, CIP 106987, JCM 1973, LMG 16324, NBRC 12128, VKM Ac-2104, BCRC 12118, CCM 4749, CGMCC 1.1921, IFO 12128, KACC 10933, KCTC 3385, NCIMB 12765, CCRC 12118

Strain history: CIP <- 2001, JCM <- ATCC <- CCEB <- O. Lysenko: strain M-570

NCBI tax ID(s): 37930 (species)

SI-ID 248454

LMG 16324, ATCC 19271, CCRC 12118, DSM 20168, IFO 12128, JCM 1973, NCFB 2292, NCIMB 12765, CCM 4749, VKM Ac-2104, CIP 106987, KCTC 3385, NBRC 12128, BCRC 12118, KACC 10933, CGMCC 1.1921

Special Collections

Other strains from Glutamicibacter protophormiae

Section

When using BacDive for research please cite our paper

Glutamicibacter protophormiae M-570 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from fly .

Gram-positive
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Glutamicibacter*
	Species	**Glutamicibacter protophormiae**
	Full Scientific Name (LPSN)	Glutamicibacter protophormiae (Lysenko 1959) Busse 2016

	Synonym	Brevibacterium protophormiae
	Synonym	Arthrobacter protophormiae

Information on morphological and physiological properties Morphology

[Ref.: #121974]	Gram stain	positive
[Ref.: #125438]	Gram stain	positive Confidence in %92.471

[Ref.: #121974]	Cell shape	rod-shaped

[Ref.: #121974]	Motility	no
[Ref.: #125438]	Motility	no Confidence in %92.5

[Ref.: #121974]

Hemolysis ability

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41924]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41924]

Culture medium growth

[Ref.: #41924]

Culture medium composition

expand / minimize

[Ref.: #8599]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #8599]

Culture medium growth

[Ref.: #8599]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8599]

Culture medium composition

expand / minimize

[Ref.: #121974]

Culture medium

CIP Medium 72

[Ref.: #121974]

Culture medium growth

[Ref.: #121974]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #8599]		growth	30 °C
[Ref.: #41924]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #121974]		growth	10-37 °C
[Ref.: #121974]	no	growth	41 °C
[Ref.: #121974]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #121974]

Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #121974]		NaCl		growth	0-10	%

[Ref.: #8599]	Murein short key	A11.35
[Ref.: #8599]	Murein types	A4alpha L-Lys-L-Ala-L-Glu

[Ref.: #67770]

Observation

quinones: MK-8 (MK-9)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121974]	citrate ChEBI	+	carbon source
[Ref.: #121974]	esculin ChEBI	-	hydrolysis
[Ref.: #121974]	hippurate ChEBI	+	hydrolysis
[Ref.: #121974]	nitrate ChEBI	+	reduction
[Ref.: #121974]	nitrate ChEBI	-	respiration
[Ref.: #121974]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #121974]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #121974]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #121974]		acetoin ChEBI	-
[Ref.: #121974]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121974]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #121974]	amylase	-
[Ref.: #121974]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121974]	caseinase	-	3.4.21.50
[Ref.: #121974]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #121974]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121974]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #121974]	gelatinase	+/-
[Ref.: #121974]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #121974]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121974]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121974]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121974]	oxidase	-
[Ref.: #121974]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #121974]	tryptophan deaminase	-
[Ref.: #121974]	tween esterase	-
[Ref.: #121974]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121974]	1945	not determinedn.d.	+	+	-	-	-	-	-	-	-	+	+	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	-	-	+	-	+	+	+	+	-	+	-	-	-	+	-	-	-	+	-	-	+	-	-	-	+	+	-	-	+	-	-	+	-	+	+	+	+	+	+	+	+	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121974]	9971	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	+	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8599]	Sample type/isolated from	fly (Protophormia terraenovae)
[Ref.: #8599]	Host species	Protophormia terraenovae

[Ref.: #67770]	Sample type/isolated from	Fly (Protophormia terrae-novae)
[Ref.: #67770]	Host species	Protophormia terrae-novae
[Ref.: #67770]	Country	Czechoslovakia
[Ref.: #67770]	Continent	Europe

[Ref.: #121974]	Sample type/isolated from	Fly, Protophormia terraenovae
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Insecta

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X80745 (>99% sequence identity) for Glutamicibacter from Microbeatlas

Aquatic Samples	1
Soil Samples	33
Animal Samples	39
Plant Samples	4
Total Samples	77

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8599]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121974]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	A.protophormiae 16S rDNA	X80745	1473	GenBank ENA	37930 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Glutamicibacter protophormiae DSM 20168	GCA_017876615	contig	GenBank ENA	37930 tax ID	*
[Ref.: #66792]	Glutamicibacter protophormiae JCM 1973	GCA_014647495	contig	GenBank ENA	37930 tax ID	*
[Ref.: #66792]	Glutamicibacter protophormiae strain DSM 20168	37930.6	wgs	PATRIC	37930 tax ID	*
[Ref.: #66792]	Glutamicibacter protophormiae strain JCM 1973	37930.4	wgs	PATRIC	37930 tax ID	*
[Ref.: #66792]	Glutamicibacter protophormiae DSM 20168	2918390780	draft	JGI IMG/M	37930 tax ID	*

[Ref.: #8599]	GC-content	63.2 mol%
[Ref.: #67770]	GC-content	64.2 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	63.2 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Glutamicibacter protophormiae strain DSM 20168 PATRIC: 37930.6
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	92.471	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.339	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	72.879	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	87.911	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.462	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	92.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Glutamicibacter protophormiae DSM 20168 NCBI: GCA_017876615
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	89.7
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	74.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	85.7
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	79.9

Availability in culture collections External links

[Ref.: #8599]

Culture collection no.

DSM 20168, ATCC 19271, CCEB 282, CIP 106987, JCM 1973, LMG 16324, NBRC 12128, VKM Ac-2104, BCRC 12118, CCM 4749, CGMCC 1.1921, IFO 12128, KACC 10933, KCTC 3385, NCIMB 12765, CCRC 12118

[Ref.: #76979]

SI-ID 248454

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Two Glycosyl 1-Phosphate Polymers and Teichulosonic Acid from Glutamicibacter protophormiae VKM Ac-2104(T) Cell Wall.	Shashkov AS, Tul'skaya EM, Dorofeeva LV, Evtushenko LI, Potekhina NV	Biochemistry (Mosc)	10.1134/S0006297920050120	2020	*
Enzymology	[Characterization of D-amino acid oxidase and its mutants from Arthrobacter protophormiae].	Feng L, Guo J, Li H, Xu S, Ju J, Zhao B	Wei Sheng Wu Xue Bao		2014	*
Phylogeny	Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment.	Roh SW, Sung Y, Nam YD, Chang HW, Kim KH, Yoon JH, Jeon CO, Oh HM, Bae JW	J Microbiol	10.1007/s12275-007-0239-8	2008	*

References

#8599

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20168

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41924 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76979

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID248454.1 )

#121974 Collection of Institut Pasteur ; Curators of the CIP; CIP 106987

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Glutamicibacter protophormiae strain DSM 20168

Glutamicibacter protophormiae DSM 20168

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