Name: Labedella gwakjiensis KSW2-17
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7497

Type strain:

Species: Labedella gwakjiensis

Strain Designation: KSW2-17

Culture col. no.: DSM 21548, JCM 14008, KCTC 19176, NBRC 106262

Strain history: <- SD Lee, Cheju Univ.

NCBI tax ID(s): 390269 (species)

SI-ID 319378

JCM 14008, KCTC 19176, DSM 21548

Section

Labedella gwakjiensis KSW2-17 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from dried seaweed.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Labedella*
	Species	**Labedella gwakjiensis**
	Full Scientific Name (LPSN)	Labedella gwakjiensis Lee 2007

Information on morphological and physiological properties Morphology

[Ref.: #31882]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31882]	Cell length	2.7 µm

[Ref.: #31882]	Cell width	0.34 µm

[Ref.: #31882]	Cell shape	rod-shaped

[Ref.: #31882]	Motility	no

[Ref.: #31882]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15787]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15787]

Culture medium growth

[Ref.: #15787]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15787]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15787]	growth	28 °C
[Ref.: #31882]	growth	10-37 °C
[Ref.: #31882]	optimum	27.5 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #15787]	Temperature range	mesophilic
[Ref.: #31882]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31882]			optimum	7.1
[Ref.: #31882]			growth	5.1-10.1

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31882]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31882]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.896

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31882]		NaCl		growth	0-5	%
[Ref.: #31882]		NaCl		optimum	2.5	%

[Ref.: #31882]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-10 (44%), MK-11 (31%)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31882]	arabinose ChEBI	+	carbon source
[Ref.: #31882]	cellobiose ChEBI	+	carbon source
[Ref.: #31882]	esculin ChEBI	+	hydrolysis
[Ref.: #31882]	fructose ChEBI	+	carbon source
[Ref.: #31882]	galactose ChEBI	+	carbon source
[Ref.: #31882]	gelatin ChEBI	+	carbon source
[Ref.: #31882]	glucose ChEBI	+	carbon source
[Ref.: #31882]	glycerol ChEBI	+	carbon source
[Ref.: #31882]	lactose ChEBI	+	carbon source
[Ref.: #31882]	leucine ChEBI	+	carbon source
[Ref.: #31882]	maltose ChEBI	+	carbon source
[Ref.: #31882]	mannitol ChEBI	+	carbon source
[Ref.: #31882]	mannose ChEBI	+	carbon source
[Ref.: #31882]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #31882]	myo-inositol ChEBI	+	carbon source
[Ref.: #31882]	raffinose ChEBI	+	carbon source
[Ref.: #31882]	rhamnose ChEBI	+	carbon source
[Ref.: #31882]	salicin ChEBI	+	carbon source
[Ref.: #31882]	sorbitol ChEBI	+	carbon source
[Ref.: #31882]	sucrose ChEBI	+	carbon source
[Ref.: #31882]	trehalose ChEBI	+	carbon source
[Ref.: #31882]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #31882]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #31882]	alpha-galactosidase	+	3.2.1.22
[Ref.: #31882]	catalase	+	1.11.1.6
[Ref.: #31882]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15787]	Sample type/isolated from	dried seaweed
[Ref.: #15787]	Geographic location (country and/or sea, region)	coast of Jeju
[Ref.: #15787]	Country	Republic of Korea
[Ref.: #15787]	Country ISO 3 Code	KOR
[Ref.: #15787]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Dried seaweed
[Ref.: #67770]	Geographic location (country and/or sea, region)	Gwakji Beach in Jeju
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From dried seaweed
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Algae	-
#Engineered	#Food production	-
#Condition	#Xerophilic	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15787]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15787]	Labedella gwakjiensis strain KSW2-17 16S ribosomal RNA gene, partial sequence	DQ533552	1407	ENA	390269 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Labedella gwakjiensis DSM 21548	GCA_003014675	contig	GenBank	390269 tax ID
[Ref.: #67770]	Labedella gwakjiensis KSW2-17	GCA_003990035	contig	GenBank	390269 tax ID
[Ref.: #66792]	Labedella gwakjiensis strain DSM 21548	390269.3	wgs	PATRIC	390269 tax ID	*
[Ref.: #66792]	Labedella gwakjiensis DSM 21548	2734482166	draft	JGI IMG/M	390269 tax ID	*

[Ref.: #15787]	GC-content	68 mol%
[Ref.: #67770]	GC-content	68 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	69.2 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Labedella gwakjiensis strain DSM 21548 PATRIC: 390269.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Labedella gwakjiensis strain DSM 21548 PATRIC: 390269.3
[Ref.: #69480]	gram-positive	yes	91.325	yes
[Ref.: #69480]	anaerobic	no	99.545	yes
[Ref.: #69480]	halophile	no	93.171	no
[Ref.: #69480]	spore-forming	no	91.962	no
[Ref.: #69480]	glucose-util	yes	87.083	no
[Ref.: #69480]	aerobic	yes	93.758	yes
[Ref.: #69480]	motile	no	88.856	yes
[Ref.: #69480]	flagellated	no	97.585	yes
[Ref.: #69480]	thermophile	no	99.582	yes
[Ref.: #69480]	glucose-ferment	no	87.975	no

Availability in culture collections External links

[Ref.: #15787]

Culture collection no.

DSM 21548, JCM 14008, KCTC 19176, NBRC 106262

[Ref.: #76943]

SI-ID 319378

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Labedella phragmitis sp. nov. and Labedella populi sp. nov., two endophytic actinobacteria isolated from plants in the Taklamakan Desert and emended description of the genus Labedella.	Li FN, Lu Q, Liao SL, Jin T, Li W, Sun CH	Syst Appl Microbiol	10.1016/j.syapm.2019.126004	2019	*
Phylogeny	Labedella endophytica sp. nov., a novel endophytic actinobacterium isolated from stem of Anabasis elatior (C. A. Mey.) Schischk.	Wang HF, Zhang YG, Cheng J, Hozzein WN, Liu WH, Li L, Chen JY, Guo JW, Zhang YM, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0307-0	2014	*
Phylogeny	Diaminobutyricibacter tongyongensis gen. nov., sp. nov. and Homoserinibacter gongjuensis gen. nov., sp. nov. belong to the family Microbacteriaceae.	Kim SJ, Ahn JH, Weon HY, Hamada M, Suzuki K, Kwon SW	J Microbiol	10.1007/s12275-014-3278-y	2014	*
Phylogeny	Description of Galbitalea soli gen. nov., sp. nov., and Frondihabitans sucicola sp. nov.	Kim SJ, Lim JM, Ahn JH, Weon HY, Hamada M, Suzuki KI, Ahn TY, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.058339-0	2013	*
Phylogeny	Diaminobutyricimonas aerilata gen. nov., sp. nov., a novel member of the family Microbacteriaceae isolated from an air sample in Korea.	Jang YH, Kim SJ, Hamada M, Tamura T, Ahn JH, Weon HY, Suzuki K, Kwon SW	J Microbiol	10.1007/s12275-012-2118-1	2012	*
Phylogeny	Naasia aerilata gen. nov., sp. nov., a member of the family Microbacteriaceae isolated from air.	Weon HY, Kim SJ, Jang YH, Hamada M, Tamura T, Ahn JH, Suzuki KI, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.046599-0	2012	*
Phylogeny	Amnibacterium kyonggiense gen. nov., sp. nov., a new member of the family Microbacteriaceae.	Kim SJ, Lee SS	Int J Syst Evol Microbiol	10.1099/ijs.0.018788-0	2010	*
Phylogeny	Labedella gwakjiensis gen. nov., sp. nov., a novel actinomycete of the family Microbacteriaceae.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.64591-0	2007	*

References

#15787

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21548

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31882

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28142 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76943

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID319378.1 )

#28142

IJSEM 2498 2007 ( DOI 10.1099/ijs.0.64591-0 , PubMed 17978208 )

* These data were automatically processed and therefore are not curated

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Labedella gwakjiensis strain DSM 21548

Labedella gwakjiensis strain DSM 21548

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