Microbacterium murale (DSM 22178, CCM 7640, 01-Gi-001)

Name: Microbacterium murale (DSM 22178, CCM 7640, 01-Gi-001)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7465

Type strain

Strain Designation 01-Gi-001

Culture col. no. DSM 22178 CCM 7640 01-Gi-001 JCM 30494

NCBI tax ID(s) 1081040

Special Collections DSMZ JCM Literature strains

History <- P. Kämpfer, Univ. Giessen, Germany; 01-Gi-001 <- J. Schäfer CCM 7640 <-- P. Kämpfer; Justus-Liebig-Univ. Giessen, Germany; 01-Gi-001.

Links

Microbacterium murale 01-Gi-001 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from indoor wall colonized with moulds.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405357

DSM 22178,CCUG 57579T

@ref 20215

Last LPSN update 2026-02-09 11:19:28

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microbacterium

Species Microbacterium murale

Full scientific name Microbacterium murale Kämpfer et al. 2012

BacDive ID	Other strains from **Microbacterium murale** (1)	Type strain
100903	M. murale SF001449(FSU),

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30509	positive	2.5 µm	1.1 µm	rod-shaped
125439	positive				98.7

Pigmentation

30509

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16133	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16133	positive	growth	28
30509	positive	growth	25-30
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30509	aerobe
125439	obligate aerobe	99.7

Spore formation

30509

Spore formationno

Murein

@ref	Murein short key	Type
16133	B05	B2ß {Gly} [L-Hsr] D-Glu-D-Orn

Observation

67770

Observationquinones: MK-13, MK-12

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30509	37054 ChEBI	3-hydroxybutyrate	+	carbon source
30509	16449 ChEBI	alanine	+	carbon source
30509	22599 ChEBI	arabinose	+	carbon source
30509	35391 ChEBI	aspartate	+	carbon source
30509	17057 ChEBI	cellobiose	+	carbon source
30509	4853 ChEBI	esculin	+	hydrolysis
30509	28757 ChEBI	fructose	+	carbon source
30509	28260 ChEBI	galactose	+	carbon source
30509	24265 ChEBI	gluconate	+	carbon source
30509	17234 ChEBI	glucose	+	carbon source
30509	27570 ChEBI	histidine	+	carbon source
30509	24996 ChEBI	lactate	+	carbon source
30509	25017 ChEBI	leucine	+	carbon source
30509	25115 ChEBI	malate	+	carbon source
30509	17306 ChEBI	maltose	+	carbon source
30509	37684 ChEBI	mannose	+	carbon source
30509	506227 ChEBI	N-acetylglucosamine	+	carbon source
30509	18401 ChEBI	phenylacetate	+	carbon source
30509	28044 ChEBI	phenylalanine	+	carbon source
30509	17148 ChEBI	putrescine	+	carbon source
30509	15361 ChEBI	pyruvate	+	carbon source
30509	33942 ChEBI	ribose	+	carbon source
30509	17992 ChEBI	sucrose	+	carbon source
30509	27082 ChEBI	trehalose	+	carbon source
30509	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30509	catalase	+	1.11.1.6
30509	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#Indoor
#Host	#Fungi	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16133	indoor wall colonized with moulds	Giessen	Germany	DEU	Europe
67770	Indoor wall colonized with moulds	Giessen	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence HE585693 (>99% sequence identity) for Microbacterium from Microbeatlas

Aquatic Samples	29
Soil Samples	50
Animal Samples	126
Plant Samples	19
Total Samples	224

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16133	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1463518v1 assembly for Microbacterium murale CCM 7640	scaffold	GCA_014635185	1081040.3	2989685480	1081040	75.46

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16133	Microbacterium murale partial 16S rRNA gene, type strain 01-Gi-001T	HE585693	1356		1081040

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Microbacterium murale CCM 7640
NCBI: GCA_014635185

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	59.30	no
125439	motility	BacteriaNetⓘ	no	76.90	no
125439	gram_stain	BacteriaNetⓘ	positive	98.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Microbacterium murale CCM 7640
NCBI: GCA_014635185.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.33	yes
125438	anaerobic	anaerobicⓘ	no	98.24	yes
125438	aerobic	aerobicⓘ	yes	86.47	yes
125438	spore-forming	spore-formingⓘ	no	76.67	yes
125438	thermophilic	thermophileⓘ	no	95.92	no
125438	flagellated	motile2+ⓘ	no	77.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium shaanxiense sp. nov., isolated from the nodule surface of soybean.	Peng S, Dongying L, Bingxin Y, Mingjun L, Gehong W	Int J Syst Evol Microbiol	10.1099/ijs.0.000116	2015
Phylogeny	Microbacterium petrolearium sp. nov., isolated from an oil-contaminated water sample.	Wang H, Xiang T, Wang Y, Song J, Zhai Y, Chen X, Li Y, Zhao B, Zhao B, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijs.0.061119-0	2014
Phylogeny	Microbacterium murale sp. nov., isolated from an indoor wall.	Kampfer P, Schafer J, Lodders N, Martin K	Int J Syst Evol Microbiol	10.1099/ijs.0.037705-0	2011

References

#16133	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22178
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26841	IJSEM 2669 2012 ( DOI 10.1099/ijs.0.037705-0 , PubMed 22199224 )
#30509	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26841
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microbacterium murale (DSM 22178, CCM 7640, 01-Gi-001)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Murein

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014635185

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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