Name: Microbacterium murale 01-Gi-001
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7465

Type strain:

Species: Microbacterium murale

Strain Designation: 01-Gi-001

Culture col. no.: DSM 22178, CCM 7640, JCM 30494

Strain history: CCM 7640 <-- P. Kämpfer; Justus-Liebig-Univ. Giessen, Germany; 01-Gi-001.

NCBI tax ID(s): 1081040 (species)

SI-ID 405357

DSM 22178

Other strains from Microbacterium murale

M. murale SF001449(FSU),

Section

Microbacterium murale 01-Gi-001 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from indoor wall colonized with moulds.

Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium murale**
	Full Scientific Name (LPSN)	Microbacterium murale Kämpfer et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30509]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30509]	Cell length	2.5 µm

[Ref.: #30509]	Cell width	1.1 µm

[Ref.: #30509]	Cell shape	rod-shaped

[Ref.: #30509]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16133]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #16133]

Culture medium growth

[Ref.: #16133]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16133]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16133]	growth	28 °C
[Ref.: #30509]	growth	25-30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #16133]	Temperature range	mesophilic
[Ref.: #30509]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30509]

Oxygen tolerance

aerobe

[Ref.: #30509]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.959

[Ref.: #16133]	Murein short key	B05
[Ref.: #16133]	Murein types	B2ß {Gly} [L-Hsr] D-Glu-D-Orn

[Ref.: #67770]

Observation

quinones: MK-13, MK-12

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30509]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #30509]	alanine ChEBI	+	carbon source
[Ref.: #30509]	arabinose ChEBI	+	carbon source
[Ref.: #30509]	aspartate ChEBI	+	carbon source
[Ref.: #30509]	cellobiose ChEBI	+	carbon source
[Ref.: #30509]	esculin ChEBI	+	hydrolysis
[Ref.: #30509]	fructose ChEBI	+	carbon source
[Ref.: #30509]	galactose ChEBI	+	carbon source
[Ref.: #30509]	gluconate ChEBI	+	carbon source
[Ref.: #30509]	glucose ChEBI	+	carbon source
[Ref.: #30509]	histidine ChEBI	+	carbon source
[Ref.: #30509]	lactate ChEBI	+	carbon source
[Ref.: #30509]	leucine ChEBI	+	carbon source
[Ref.: #30509]	malate ChEBI	+	carbon source
[Ref.: #30509]	maltose ChEBI	+	carbon source
[Ref.: #30509]	mannose ChEBI	+	carbon source
[Ref.: #30509]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30509]	phenylacetate ChEBI	+	carbon source
[Ref.: #30509]	phenylalanine ChEBI	+	carbon source
[Ref.: #30509]	putrescine ChEBI	+	carbon source
[Ref.: #30509]	pyruvate ChEBI	+	carbon source
[Ref.: #30509]	ribose ChEBI	+	carbon source
[Ref.: #30509]	sucrose ChEBI	+	carbon source
[Ref.: #30509]	trehalose ChEBI	+	carbon source
[Ref.: #30509]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30509]		catalase	+	1.11.1.6
[Ref.: #30509]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16133]	Sample type/isolated from	indoor wall colonized with moulds
[Ref.: #16133]	Geographic location (country and/or sea, region)	Giessen
[Ref.: #16133]	Country	Germany
[Ref.: #16133]	Country ISO 3 Code	DEU
[Ref.: #16133]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Indoor wall colonized with moulds
[Ref.: #67770]	Geographic location (country and/or sea, region)	Giessen
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Indoor
#Host	#Fungi	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HE585693 (>99% sequence identity) for Microbacterium from Microbeatlas

Aquatic Samples	29
Soil Samples	50
Animal Samples	126
Plant Samples	19
Total Samples	224

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16133]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16133]	Microbacterium murale partial 16S rRNA gene, type strain 01-Gi-001T	HE585693	1356	ENA	1081040 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbacterium murale CCM 7640	GCA_014635185	scaffold	GenBank	1081040 tax ID	*
[Ref.: #66792]	Microbacterium murale strain CCM 7640	1081040.3	wgs	PATRIC	1081040 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbacterium murale CCM 7640 NCBI: GCA_014635185.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium murale CCM 7640 NCBI: GCA_014635185.1
[Ref.: #69480]	flagellated	no	91.879	no
[Ref.: #69480]	gram-positive	yes	93.63	yes
[Ref.: #69480]	anaerobic	no	99.673	yes
[Ref.: #69480]	aerobic	yes	93.61	yes
[Ref.: #69480]	halophile	no	83.497	no
[Ref.: #69480]	spore-forming	no	85.493	yes
[Ref.: #69480]	thermophile	no	99.719	yes
[Ref.: #69480]	glucose-util	yes	87.874	yes
[Ref.: #69480]	motile	yes	65.005	no
[Ref.: #69480]	glucose-ferment	no	88.667	no

Availability in culture collections External links

[Ref.: #16133]

Culture collection no.

DSM 22178, CCM 7640, JCM 30494

[Ref.: #76910]

SI-ID 405357

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium shaanxiense sp. nov., isolated from the nodule surface of soybean.	Peng S, Dongying L, Bingxin Y, Mingjun L, Gehong W	Int J Syst Evol Microbiol	10.1099/ijs.0.000116	2015	*
Phylogeny	Microbacterium petrolearium sp. nov., isolated from an oil-contaminated water sample.	Wang H, Xiang T, Wang Y, Song J, Zhai Y, Chen X, Li Y, Zhao B, Zhao B, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijs.0.061119-0	2014	*
Phylogeny	Microbacterium murale sp. nov., isolated from an indoor wall.	Kampfer P, Schafer J, Lodders N, Martin K	Int J Syst Evol Microbiol	10.1099/ijs.0.037705-0	2011	*

References

#16133

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22178

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30509

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26841 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76910

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405357.1 )

#26841

IJSEM 2669 2012 ( DOI 10.1099/ijs.0.037705-0 , PubMed 22199224 )

* These data were automatically processed and therefore are not curated

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Microbacterium murale CCM 7640

Microbacterium murale CCM 7640

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