Name: Agromyces indicus NIO-1018
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7284

Type strain:

Species: Agromyces indicus

Strain Designation: NIO-1018

Culture col. no.: DSM 26681, CCTCC AB 2011122, JCM 17573

Strain history: S.-K. Tang NIO-1018 <-- S. G. Dastager et al..

NCBI tax ID(s): 758919 (species)

Section

Agromyces indicus NIO-1018 is a mesophilic bacterium that was isolated from intertidal region of mangroves.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Agromyces*
	Species	**Agromyces indicus**
	Full Scientific Name (LPSN)	Agromyces indicus Dastager et al. 2012

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-12

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18271]	Sample type/isolated from	intertidal region of mangroves
[Ref.: #18271]	Geographic location (country and/or sea, region)	Chorao Island, Goa provenance
[Ref.: #18271]	Country	India
[Ref.: #18271]	Country ISO 3 Code	IND
[Ref.: #18271]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment from intertidal region of mangroves at Chorao Island
[Ref.: #67770]	Geographic location (country and/or sea, region)	Goa
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM036655 (>99% sequence identity) for Agromyces from Microbeatlas

Aquatic Samples	1167
Soil Samples	5356
Animal Samples	944
Plant Samples	723
Total Samples	8190

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18271]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18271]	Agromyces indicus strain NIO-1018 16S ribosomal RNA gene, complete sequence	HM036655	1454	ENA	758919 tax ID

[Ref.: #18271]	GC-content	71.8 mol%
[Ref.: #67770]	GC-content	71.8 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #18271]

Culture collection no.

DSM 26681, CCTCC AB 2011122, JCM 17573

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agromyces protaetiae sp. nov., isolated from gut of larva of Protaetia brevitarsis seulensis.	Heo J, Hamada M, Tamura T, Saito S, Lee SD, Kim JS, Hong SB, Kwon SW, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003908	2020	*
Phylogeny	Agromyces indicus sp. nov., isolated from mangroves sediment in Chorao Island, Goa, India.	Dastager SG, Qiang ZL, Damare S, Tang SK, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-012-9744-9	2012	*

References

#18271

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26681

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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