Agromyces indicus (DSM 26681, CCTCC AB 2011122, JCM 17573)

Name: Agromyces indicus (DSM 26681, CCTCC AB 2011122, JCM 17573)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7284

Type strain

Strain Designation NIO-1018

Culture col. no. DSM 26681 CCTCC AB 2011122 JCM 17573 NIO-1018

NCBI tax ID(s) 758919

Special Collections DSMZ JCM

History DSMZ <- JCM; JCM 17573 JCM <-- S.-K. Tang NIO-1018 <-- S. G. Dastager et al..

Links

Agromyces indicus NIO-1018 is a bacterium that was isolated from intertidal region of mangroves.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 133055

JCM 17573

@ref 20215

Last LPSN update 2026-05-29 08:26:36

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Agromyces

Species Agromyces indicus

Full scientific name Agromyces indicus Dastager et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	91.262

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.302

Spore formation

@ref	Spore formation	Confidence
125439		94.694

Observation

67770

Observationquinones: MK-12

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Tidal flat

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
18271	intertidal region of mangroves	Chorao Island, Goa provenance	India	IND	Asia
67770	Sediment from intertidal region of mangroves at Chorao Island	Goa	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence HM036655 (>99% sequence identity) for Agromyces from Microbeatlas

Aquatic Samples	1167
Soil Samples	5356
Animal Samples	944
Plant Samples	723
Total Samples	8190

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18271	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3143229v1 assembly for Agromyces indicus CCTCC AB 2011122	scaffold	GCA_031432295	758919.4	8120993847	758919	68.61
124043	ASM3953808v1 assembly for Agromyces indicus JCM 17573	contig	GCA_039538085			758919	56.75

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18271	Agromyces indicus strain NIO-1018 16S ribosomal RNA gene, complete sequence	HM036655	1454		758919

GC content

@ref	GC-content (mol%)	Method
18271	71.8
67770	71.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3143229v1 assembly for Agromyces indicus CCTCC AB 2011122
NCBI: GCA_031432295

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no
125439	gram_stain	BacteriaNetⓘ	positive	91.26	no
125439	motility	BacteriaNetⓘ	no	62.06	no
125439	spore_formation	BacteriaNetⓘ	no	94.69	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agromyces protaetiae sp. nov., isolated from gut of larva of Protaetia brevitarsis seulensis.	Heo J, Hamada M, Tamura T, Saito S, Lee SD, Kim JS, Hong SB, Kwon SW, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003908	2020
Phylogeny	Agromyces indicus sp. nov., isolated from mangroves sediment in Chorao Island, Goa, India.	Dastager SG, Qiang ZL, Damare S, Tang SK, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-012-9744-9	2012

References

#18271	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26681
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Agromyces indicus (DSM 26681, CCTCC AB 2011122, JCM 17573)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_031432295

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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