Name: Agromyces mediolanus DSM 20152
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7265

Type strain:

Species: Agromyces mediolanus

Culture col. no.: DSM 20152, ATCC 14004, JCM 3346, NCIB 7206, CIP 104860, IFO 15704, KCTC 3136, NBRC 15704, NCIMB 7206, VKM Ac-1388

Strain history: CIP <- 1996, JCM <- N.S. Agre <- D. Jones <- NCIB <- F.M. Berger <- Metropolitan Police Lab. <- A. Ercoli and L. Molina

NCBI tax ID(s): 41986 (species)

SI-ID 8227

LMG 17243, ATCC 14004, DSM 20152, IFO 15704, JCM 3346, KCTC 3136, NCIMB 7206, NCTC 7206, NRRL B-16529, NCIB 7206, CIP 104860, VKM Ac-1388, NBRC 15704

Special Collections

Other strains from Agromyces mediolanus

Section

Agromyces mediolanus DSM 20152 is an obligate aerobe, Gram-positive, rod-shaped bacterium of the family Microbacteriaceae.

Gram-positive
rod-shaped
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Agromyces*
	Species	**Agromyces mediolanus**
	Full Scientific Name (LPSN)	Agromyces mediolanus (ex Mamoli 1939) Suzuki et al. 1996

Information on morphological and physiological properties Morphology

[Ref.: #120869]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.329

[Ref.: #120869]	Cell shape	rod-shaped

[Ref.: #120869]	Motility	no

[Ref.: #18426]	Colony color	Beige (1001)
[Ref.: #18426]	Incubation period	10-14 days
[Ref.: #18426]	Cultivation medium used	ISP 2

[Ref.: #18426]	Colony color	Beige (1001)
[Ref.: #18426]	Incubation period	10-14 days
[Ref.: #18426]	Cultivation medium used	ISP 3

[Ref.: #18426]	Colony color	Beige (1001)
[Ref.: #18426]	Incubation period	10-14 days
[Ref.: #18426]	Cultivation medium used	ISP 4

[Ref.: #18426]	Colony color	Beige (1001)
[Ref.: #18426]	Incubation period	10-14 days
[Ref.: #18426]	Cultivation medium used	ISP 5

[Ref.: #18426]	Colony color	Beige (1001)
[Ref.: #18426]	Incubation period	10-14 days
[Ref.: #18426]	Cultivation medium used	ISP 6

[Ref.: #18426]	Colony color	Beige (1001)
[Ref.: #18426]	Incubation period	10-14 days
[Ref.: #18426]	Cultivation medium used	ISP 7

[Ref.: #18426]	Multicellular complex forming ability	no
[Ref.: #18426]	Medium Name (multicellularity)	ISP 2

[Ref.: #18426]	Multicellular complex forming ability	no
[Ref.: #18426]	Medium Name (multicellularity)	ISP 3

[Ref.: #18426]	Multicellular complex forming ability	no
[Ref.: #18426]	Medium Name (multicellularity)	ISP 4

[Ref.: #18426]	Multicellular complex forming ability	no
[Ref.: #18426]	Medium Name (multicellularity)	ISP 5

[Ref.: #18426]	Multicellular complex forming ability	no
[Ref.: #18426]	Medium Name (multicellularity)	ISP 6

[Ref.: #18426]	Multicellular complex forming ability	no
[Ref.: #18426]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8576]

Culture medium

CORYNEBACTERIUM AGAR (DSMZ Medium 53)

[Ref.: #8576]

Culture medium growth

[Ref.: #8576]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8576]

Culture medium composition

expand / minimize

[Ref.: #18426]

Culture medium

ISP 2

[Ref.: #18426]

Culture medium growth

[Ref.: #18426]

Culture medium composition

expand / minimize

[Ref.: #18426]

Culture medium

ISP 3

[Ref.: #18426]

Culture medium growth

[Ref.: #18426]

Culture medium composition

expand / minimize

[Ref.: #18426]

Culture medium

ISP 4

[Ref.: #18426]

Culture medium growth

[Ref.: #18426]

Culture medium composition

expand / minimize

[Ref.: #18426]

Culture medium

ISP 5

[Ref.: #18426]

Culture medium growth

[Ref.: #18426]

Culture medium composition

expand / minimize

[Ref.: #18426]

Culture medium

ISP 6

[Ref.: #18426]

Culture medium growth

[Ref.: #18426]

Culture medium composition

expand / minimize

[Ref.: #18426]

Culture medium

ISP 7

[Ref.: #18426]

Culture medium growth

[Ref.: #18426]

Culture medium composition

expand / minimize

[Ref.: #37050]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #37050]

Culture medium growth

[Ref.: #37050]

Culture medium composition

expand / minimize

[Ref.: #120869]

Culture medium

CIP Medium 3

[Ref.: #120869]

Culture medium growth

[Ref.: #120869]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #8576]		growth	30 °C
[Ref.: #18426]		optimum	28 °C
[Ref.: #37050]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #120869]		growth	25-41 °C
[Ref.: #120869]	no	growth	10 °C
[Ref.: #120869]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #120869]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #8576]

Name of produced compound

steroids

	Salt	Tested relation		Salt conc.
[Ref.: #120869]	NaCl		growth	0-6	%
[Ref.: #120869]	NaCl	no	growth	8	%
[Ref.: #120869]	NaCl	no	growth	10	%

[Ref.: #8576]	Murein short key	B07
[Ref.: #8576]	Murein types	B2gamma {Gly} [L-Dab] D-Glu-D-Dab

[Ref.: #67770]

Observation

quinones: MK-12, MK-11

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #120869]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120869]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #120869]	hippurate ChEBI	-	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120869]	nitrate ChEBI	-	reduction
[Ref.: #120869]	nitrate ChEBI	-	respiration
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #120869]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #120869]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #120869]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120869]		acetoin ChEBI	-
[Ref.: #120869]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120869]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120869]	amylase	-
[Ref.: #120869]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #120869]	caseinase	-	3.4.21.50
[Ref.: #120869]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #120869]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120869]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #120869]	gelatinase	-
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #120869]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120869]	lipase	-
[Ref.: #120869]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120869]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120869]	oxidase	-
[Ref.: #120869]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #120869]	protease	-
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #120869]	tryptophan deaminase	-
[Ref.: #120869]	tween esterase	-
[Ref.: #120869]	urease	-	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #120869]	9781	not determinedn.d.	+	-	-	-	+	-	-	-	-	+	+	+	+	-	+	-	-	-	-	-	-	-	+	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120869]	865	not determinedn.d.	+	-	+	+	+	-	-	-	-	-	+	-	-	-	-	+	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18426]	107	-	+	+	+	-	+	+	-	+	+	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18426]	136	not determinedn.d.	+	+	+	+	+	+	+	-	-	+	+	-	+	-	+	+	+	-	+
[Ref.: #120869]	8252	-	-	+	+	-	+	+	+	+	-	+	+	-	+	-	+	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence X77449 (>99% sequence identity) for Agromyces mediolanus from Microbeatlas

Aquatic Samples	780
Soil Samples	3220
Animal Samples	1854
Plant Samples	557
Total Samples	6411

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18426]	Biosafety level	1	German classification
[Ref.: #8576]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120869]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Agromyces mediolanus strain VKM Ac-1388 16S ribosomal RNA gene, partial sequence	JX186590	1479	GenBank ENA	41986 tax ID
[Ref.: #67770]	C.medislanum (DSM 20152) 16S rRNA gene	X77449	1517	GenBank ENA	41986 tax ID
[Ref.: #20218]	Agromyces mediolanus strain JCM3346 16S ribosomal RNA gene, partial sequence	HM641754	1372	GenBank ENA	41986 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Agromyces mediolanus JCM 3346	GCA_014648575	scaffold	GenBank ENA	41986 tax ID	*
[Ref.: #66792]	Agromyces mediolanus strain JCM 3346	41986.5	wgs	PATRIC	41986 tax ID	*

[Ref.: #8576]	GC-content	74.7 mol%
[Ref.: #67770]	GC-content	74.4 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	72.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Agromyces mediolanus JCM 3346 NCBI: GCA_014648575.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Agromyces mediolanus JCM 3346 NCBI: GCA_014648575.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.329	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.72	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.732	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	74.253	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.467	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	79	no

Availability in culture collections External links

[Ref.: #8576]

Culture collection no.

DSM 20152, ATCC 14004, JCM 3346, NCIB 7206, CIP 104860, IFO 15704, KCTC 3136, NBRC 15704, NCIMB 7206, VKM Ac-1388

[Ref.: #76716]

SI-ID 8227

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agromyces protaetiae sp. nov., isolated from gut of larva of Protaetia brevitarsis seulensis.	Heo J, Hamada M, Tamura T, Saito S, Lee SD, Kim JS, Hong SB, Kwon SW, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003908	2020	*
Phylogeny	Agromyces ulmi sp. nov., a xylanolytic bacterium isolated from Ulmus nigra in Spain.	Rivas R, Trujillo ME, Mateos PF, Martinez-Molina E, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.63058-0	2004	*
Phylogeny	Agromyces mediolanus sp. nov., nom. rev., comb. nov., a species for "Corynebacterium mediolanum" Mamoli 1939 and for some aniline-assimilating bacteria which contain 2,4-diaminobutyric acid in the cell wall peptidoglycan.	Suzuki K, Sasaki J, Uramoto M, Nakase T, Komagata K	Int J Syst Bacteriol	10.1099/00207713-46-1-88	1996	*
Phylogeny	Agromyces soli sp. nov., isolated from farm soil.	Lee M, Ten LN, Woo SG, Park J	Int J Syst Evol Microbiol	10.1099/ijs.0.021568-0	2010	*

References

#8576

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20152

#18426

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37050 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76716

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID8227.1 )

#120869 Collection of Institut Pasteur ; Curators of the CIP; CIP 104860
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Agromyces mediolanus in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Agromyces mediolanus JCM 3346

Agromyces mediolanus JCM 3346

Change proposal

Change proposal