Name: Methylobacterium soli DSM 21955
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7201

Type strain:

Species: Methylobacterium soli

Culture col. no.: DSM 21955, CCTCC AA 208027, KCTC 22810, YIM 48816

Strain history: <- S.-K. Tang, YIM <- Y.-R. Cao

NCBI tax ID(s): 553447 (species)

SI-ID 403456

DSM 21955

Special Collections

DSMZ
KCTC

Section

Methylobacterium soli DSM 21955 is a Gram-negative bacterium that was isolated from forest soil.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Methylobacterium*
	Species	**Methylobacterium soli**
	Full Scientific Name (LPSN)	Methylobacterium soli Cao et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.469

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16066]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #16066]

Culture medium growth

[Ref.: #16066]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16066]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16066]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16066]	Sample type/isolated from	forest soil
[Ref.: #16066]	Geographic location (country and/or sea, region)	Sichuan Province
[Ref.: #16066]	Country	China
[Ref.: #16066]	Country ISO 3 Code	CHN
[Ref.: #16066]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU860984 (>99% sequence identity) for Methylobacterium soli subclade from Microbeatlas

Aquatic Samples	58
Soil Samples	759
Animal Samples	171
Plant Samples	126
Total Samples	1114

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16066]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16066]	Methylobacterium soli strain YIM 48816 16S ribosomal RNA gene, partial sequence	EU860984	1437	GenBank ENA	553447 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methylobacterium soli YIM 48816	GCA_008806385	scaffold	GenBank ENA	553447 tax ID	*
[Ref.: #66792]	Methylobacterium soli strain YIM 48816	553447.3	wgs	PATRIC	553447 tax ID	*
[Ref.: #66792]	Methylobacterium soli KCTC 22810	GCA_022179555	contig	GenBank ENA	553447 tax ID	*

[Ref.: #16066]

GC-content

66.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Methylobacterium soli YIM 48816 NCBI: GCA_008806385.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methylobacterium soli YIM 48816 NCBI: GCA_008806385.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.469	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.118	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.041	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.339	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.999	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	78.424	no

Availability in culture collections External links

[Ref.: #16066]

Culture collection no.

DSM 21955, CCTCC AA 208027, KCTC 22810, YIM 48816

[Ref.: #76654]

SI-ID 403456

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methylobacterium planium sp. nov., isolated from a lichen sample.	Jiang L, An D, Wang X, Zhang K, Li G, Lang L, Wang L, Jiang C, Jiang Y	Arch Microbiol	10.1007/s00203-020-01881-4	2020	*
Phylogeny	Methylobacterium segetis sp. nov., a novel member of the family Methylobacteriaceae isolated from soil on Jeju Island.	Ten LN, Li W, Elderiny NS, Kim MK, Lee SY, Rooney AP, Jung HY	Arch Microbiol	10.1007/s00203-019-01784-z	2019	*
Metabolism	Methylobacterium durans sp. nov., a radiation-resistant bacterium isolated from gamma ray-irradiated soil.	Kim J, Chhetri G, Kim I, Kim MK, Seo T	Antonie Van Leeuwenhoek	10.1007/s10482-019-01331-2	2019	*
Phylogeny	Methylobacterium soli sp. nov. a methanol-utilizing bacterium isolated from the forest soil.	Cao YR, Wang Q, Jin RX, Tang SK, Jiang Y, He WX, Lai HX, Xu LH, Jiang CL	Antonie Van Leeuwenhoek	10.1007/s10482-010-9535-0	2011	*
Phylogeny	Methylobacterium oxalidis sp. nov., isolated from leaves of Oxalis corniculata.	Tani A, Sahin N, Kimbara K	Int J Syst Evol Microbiol	10.1099/ijs.0.033019-0	2011	*

References

#16066

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21955

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76654

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403456.1 )

* These data were automatically processed and therefore are not curated

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Methylobacterium soli YIM 48816

Methylobacterium soli YIM 48816

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