Name: Methanobacterium oryzae FPi
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6945

Type strain:

Species: Methanobacterium oryzae

Strain Designation: FPi

Culture col. no.: DSM 11106, NBRC 105229

Strain history: <- C. Joulian, Université de Provence, Marseille, France; FPi <- C. Joulian {1995}

NCBI tax ID(s): 69540 (species)

SI-ID 49033

DSM 11106

Special Collections

DSMZ

Section

Methanobacterium oryzae FPi is an anaerobe archaeon that was isolated from ricefield soil.

anaerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Methanobacteria*
	Order	*Methanobacteriales*
	Family	*Methanobacteriaceae*
	Genus	*Methanobacterium*
	Species	**Methanobacterium oryzae**
	Full Scientific Name (LPSN)	Methanobacterium oryzae Joulian et al. 2000

Information on morphological and physiological properties Morphology

[Ref.: #4204]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4204]

Culture medium

METHANOBACTERIUM II MEDIUM (N2/CO2) (DSMZ Medium 825a)

[Ref.: #4204]

Culture medium growth

[Ref.: #4204]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4204]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4204]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4204]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4204]	Sample type/isolated from	ricefield soil
[Ref.: #4204]	Country	Philippines
[Ref.: #4204]	Country ISO 3 Code	PHL
[Ref.: #4204]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4204]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4204]	Methanobacterium oryzae 16S ribosomal RNA, complete sequence	AF028690	1446	GenBank ENA	69540 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanobacterium oryzae DSM 11106	2913351602	draft	JGI IMG/M	69540 tax ID	*

[Ref.: #4204]

GC-content

31 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #4204]

Culture collection no.

DSM 11106, NBRC 105229

[Ref.: #76407]

SI-ID 49033

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanobacterium oryzae sp. nov., a novel methanogenic rod isolated from a Philippines ricefield.	Joulian C, Patel BK, Ollivier B, Garcia JL, Roger PA	Int J Syst Evol Microbiol	10.1099/00207713-50-2-525	2000	*

References

#4204

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11106

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76407

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49033.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Methanobacterium oryzae in external resources:
SILVA
BRENDA
PANGAEA
GBIF