Limosilactobacillus gastricus (DSM 16045, CCUG 48454, LMG 22113)

Name: Limosilactobacillus gastricus (DSM 16045, CCUG 48454, LMG 22113)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6617

Type strain

Strain Designation Kx156A7

Culture col. no. DSM 16045 CCUG 48454 LMG 22113 CIP 109873 Kx156A7 1 more

NCBI tax ID(s) 1423749 227942

Special Collections DSMZ CCUG JCM CIP Literature strains

Links

Limosilactobacillus gastricus Kx156A7 is an anaerobe, mesophilic, Gram-positive prokaryote that was isolated from gastric biopsies, human stomach mucosa.

Gram-positive rod-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 129727

LMG 22113,CCUG 48454,DSM 16045,JCM 15952,CIP 109873

@ref 20215

Last LPSN update 2025-12-16 09:48:22

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Limosilactobacillus

Species Limosilactobacillus gastricus

Full scientific name Limosilactobacillus gastricus (Roos et al. 2005) Zheng et al. 2020

Synonyms (1)

Lactobacillus gastricus

BacDive ID	Other strains from **Limosilactobacillus gastricus** (1)	Type strain
6618	L. gastricus Kx293C4, DSM 16046, CCUG 48455, LMG 22488

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31225	positive	1.2 µm	0.9 µm	rod-shaped
119557	positive			coccus-shaped
125438					90
125438	positive				94.094

Pigmentation

31225

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6161	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
33331	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
119557	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6161	positive	growth	37	mesophilic
31225	positive	growth	25-42
31225	positive	optimum	33.5	mesophilic
33331	positive	growth	37	mesophilic
58170	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic
119557	positive	growth	25-37	mesophilic
119557	negative	growth	15
119557	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
6161	anaerobe
6161	microaerophile
31225	anaerobe
58170	anaerobe
119557	facultative anaerobe

Spore formation

@ref	Spore formation	Confidence
31225
125438		93.325

Murein

@ref	Murein short key	Type
6161	A21.04	A4ß L-Orn-D-Asp

Observation

31225

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31225	22599 ChEBI	arabinose	+	carbon source
31225	17057 ChEBI	cellobiose	+	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
31225	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
31225	28260 ChEBI	galactose	+	carbon source
31225	24265 ChEBI	gluconate	+	carbon source
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
31225	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
31225	24996 ChEBI	lactate	+	carbon source
31225	17716 ChEBI	lactose	+	carbon source
31225	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
31225	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
31225	28053 ChEBI	melibiose	+	carbon source
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
31225	506227 ChEBI	N-acetylglucosamine	+	carbon source
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
119557	17632 ChEBI	nitrate	-	reduction
119557	17632 ChEBI	nitrate	+	respiration
119557	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
31225	16634 ChEBI	raffinose	+	carbon source
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
31225	33942 ChEBI	ribose	+	carbon source
31225	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
31225	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
31225	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
119557	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119557	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119557	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
119557	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119557	ornithine decarboxylase	-	4.1.1.17
119557	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119557	-	+	+	+	-	+	-	-	-	-	+	+	+	+	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
6161	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	-	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-
119557	not determinedn.d.	-	-	-	-	-	-	-	-	-	+/-	+	+	+/-	-	-	-	-	-	-	-	+	-	+	+/-	+	+	+	+	+	+	+	+	-	-	+	-	-	-	+	-	-	-	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	#Biopsy
#Host	#Human	-
#Host Body-Site	#Gastrointestinal tract	#Stomach

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
6161	gastric biopsies, human stomach mucosa	Kalix	Sweden	SWE	Europe
58170	Human stomach biopsy,mucosa of healthy individual	Kalix	Sweden	SWE	Europe
67770	Human stomach mucosa
119557	Human, Stomach mucosa	Uppsala	Sweden	SWE	Europe	2005

Taxonmaps

69479

Global distribution of 16S sequence NR_029084 (>99% sequence identity) for Limosilactobacillus gastricus from Microbeatlas

Aquatic Samples	118
Soil Samples	178
Animal Samples	6464
Plant Samples	61
Total Samples	6821

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6161	1	Risk group (German classification) According to TRBA 466
119557	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM143436v1 assembly for Limosilactobacillus gastricus DSM 16045	scaffold	GCA_001434365	1423749.3	2700989147	1423749	65.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31225	Lactobacillus gastricus 16S ribosomal RNA gene, complete sequence	AY253658	1550		227942
6161	Limosilactobacillus gastricus strain Kx156A7 16S ribosomal RNA, partial sequence	NR_029084	1550		227942

GC content

@ref	GC-content (mol%)	Method
6161	41.3
67770	41.3	high performance liquid chromatography (HPLC)
67770	41.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Limosilactobacillus gastricus DSM 16045
NCBI: GCA_001434365

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	57.70	no
125439	motility	BacteriaNetⓘ	no	51.30	no
125439	gram_stain	BacteriaNetⓘ	positive	77.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	86.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus gastricus DSM 16045
PATRIC: 1423749.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	94.09	yes
125438	anaerobic	anaerobicⓘ	no	78.61	no
125438	spore-forming	spore-formingⓘ	no	93.33	yes
125438	aerobic	aerobicⓘ	no	94.46	yes
125438	thermophilic	thermophileⓘ	no	95.99	no
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Evaluation of Human Dental Plaque Lactic Acid Bacilli for Probiotic Potential and Functional Analysis in Relevance to Oral Health.	Choksket S, Sharma S, Harshvardhan, Pal V, Jain A, Patil PB, Korpole S, Grover V.	Indian J Microbiol	10.1007/s12088-023-01108-2	2023
Phylogeny	Lactobacillus alvi sp. nov., isolated from the intestinal tract of chicken.	Kim HJ, Eom SJ, Park SJ, Cha CJ, Kim GB	FEMS Microbiol Lett	10.1111/j.1574-6968.2011.02361.x	2011
Phylogeny	Lactobacillus gastricus sp. nov., Lactobacillus antri sp. nov., Lactobacillus kalixensis sp. nov. and Lactobacillus ultunensis sp. nov., isolated from human stomach mucosa.	Roos S, Engstrand L, Jonsson H	Int J Syst Evol Microbiol	10.1099/ijs.0.63083-0	2005

References

#6161	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16045
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27551	IJSEM 77 2005 ( DOI 10.1099/ijs.0.63083-0 , PubMed 15653856 )
#31225	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27551
#33331	; Curators of the CIP;
#58170	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48454
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119557	Collection of Institut Pasteur ; Curators of the CIP; CIP 109873
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Limosilactobacillus gastricus (DSM 16045, CCUG 48454, LMG 22113)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Murein

Observation

Metabolite utilization

Metabolite tests

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001434365

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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