Name: Niallia circulans Ford 26
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 642

Type strain:

Species: Niallia circulans

Strain Designation: Ford 26

Culture col. no.: DSM 11, ATCC 4513, CCM 2048, JCM 2504, LMG 13261, NCIB 9374, NCTC 2610, CCUG 7416, ATCC 9140, ATCC 24, BCRC 10605, CECT 10, CIP 52.75, HAMBI 1911, IAM 12462, IAM 14175, IFO 13626, KCTC 3347, LMG 6926, NBRC 13626, NCCB 75011, NCFB 1775, NCIMB 9374, NRRL B-378, NRRL B-380, VKM B-1242, VTT E-95570

Strain history: CCM 2048 <-- R. E. Gordon.

NCBI tax ID(s): 1397 (species)

Other strains from Niallia circulans

N. circulans 3Vf, DSM 1315, ATCC 15035
N. circulans C 302, DSM 1973, NCIB 10146
N. circulans DSM 7257, ATCC 4516, NRRL NRS-313
N. circulans ES2-8c1, DSM 30598
N. circulans T6_16, DSM 103922
N. circulans 2eB_C31, DSM 103997
N. circulans 2a_C20, DSM 103998
N. circulans 2bA_C23, DSM 104045

Section

Niallia circulans Ford 26 is an aerobe, mesophilic human pathogen that was isolated from soil.

aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	15-12-2021 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Firmicutes
	Class	Bacilli
	Order	Caryophanales
	Family	Bacillaceae
	Genus	Niallia
	Species	Niallia circulans
	Full Scientific Name (PNU)	Niallia circulans (Jordan 1890) Gupta et al. 2020

Synonym

Bacillus circulans

Information on culture and growth conditions Culture and growth conditions

[Ref.: #37735]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #37735]

Culture medium growth

[Ref.: #37735]

Culture medium composition

expand / minimize

[Ref.: #2018]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #2018]

Culture medium growth

[Ref.: #2018]

Culture medium link

Medium recipe at BacMedia

[Ref.: #2018]

Culture medium composition

expand / minimize

[Ref.: #2018]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #2018]

Culture medium growth

[Ref.: #2018]

Culture medium link

Medium recipe at BacMedia

[Ref.: #2018]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #2018]	growth	30 °C
[Ref.: #37735]	growth	30 °C
[Ref.: #44985]	growth	30-37 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #2018]	Temperature range	mesophilic
[Ref.: #37735]	Temperature range	mesophilic
[Ref.: #44985]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44985]	Oxygen tolerance	aerobe
[Ref.: #44985]	Oxygen tolerance	anaerobe

[Ref.: #20216]

Name of produced compound

Calcite crystals

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68379]	D-mannitol ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	glycogen ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne
[Ref.: #68379]	catalase	+	1.11.1.6	* from API Coryne
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #44985]	1822	-	+	-	+	-	+	+	-	+	-	-	-	not determinedn.d.	-	+	+	+	+	+	+	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	tetrahydrofolate metabolism	92.86	13 of 14
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	purine metabolism	89.36	84 of 94
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	degradation of sugar alcohols	87.5	14 of 16
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	pyrimidine metabolism	84.44	38 of 45
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	methionine metabolism	76.92	20 of 26
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	non-pathway related	73.68	28 of 38
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	oxidative phosphorylation	64.84	59 of 91
[Ref.: #66794]	degradation of sugar acids	64	16 of 25
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	arginine metabolism	62.5	15 of 24
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	degradation of hexoses	61.11	11 of 18
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	degradation of pentoses	60.71	17 of 28
[Ref.: #66794]	tryptophan metabolism	60.53	23 of 38
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	ascorbate metabolism	59.09	13 of 22
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	citric acid cycle	57.14	8 of 14
[Ref.: #66794]	polyamine pathway	52.17	12 of 23
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	lysine metabolism	50	21 of 42
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	sphingosine metabolism	50	3 of 6
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	46.15	6 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	4-hydroxymandelate degradation	44.44	4 of 9
[Ref.: #66794]	ginsenoside metabolism	43.75	7 of 16
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	mevalonate metabolism	42.86	3 of 7
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	40	4 of 10
[Ref.: #66794]	phenol degradation	40	8 of 20
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	vitamin B12 metabolism	35.29	12 of 34
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2018]	Sample type/isolated from	soil

[Ref.: #44985]	Sample type/isolated from	Soil

[Ref.: #67770]	Sample type/isolated from	Soil

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2018]	Pathogenicity (human)	yes, in single cases
[Ref.: #2018]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Bacillus circulans subsp. circulans clone Bcir-1R 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478111	593	ENA	74308 tax ID	*
[Ref.: #20218]	Bacillus circulans 16S ribosomal RNA gene, partial sequence	AY043084	1496	ENA	1397 tax ID	*
[Ref.: #20218]	Bacillus circulans strain ATCC 4513 16S ribosomal RNA gene, partial sequence	AY724690	1487	ENA	1397 tax ID	*
[Ref.: #20218]	Bacillus circulans strain ATCC 4513 16S ribosomal RNA gene, partial sequence	FJ560956	952	ENA	1397 tax ID	*
[Ref.: #20218]	Bacillus circulans subsp. circulans strain ATCC 4513 clone XMYP9 16S ribosomal RNA gene, partial sequence	JX009145	1291	ENA	74308 tax ID	*
[Ref.: #20218]	Bacillus circulans subsp. circulans strain ATCC 4513 clone XMYP10 16S ribosomal RNA gene, partial sequence	JX009146	1291	ENA	74308 tax ID	*
[Ref.: #20218]	Bacillus circulans strain IAMI12462 DNA for 16S ribosomal RNA, partial sequence	D78312	1431	ENA	1397 tax ID	*
[Ref.: #20218]	Bacillus circulans gene for 16S rRNA, partial sequence	AB006923	273	ENA	1397 tax ID	*
[Ref.: #20218]	Bacillus circulans gene for 16S rRNA, partial sequence	AB271747	1473	ENA	1397 tax ID	*
[Ref.: #20218]	B.circulans 16S ribosomal RNA	X60613	1426	ENA	1397 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Niallia circulans NBRC 13626 NBRC 13626	GCA_001591585	contig	GenBank	1348626 tax ID	*
[Ref.: #66792]	Niallia circulans NCTC2610	GCA_900445325	contig	GenBank	1397 tax ID	*
[Ref.: #66792]	Bacillus circulans NBRC 13626	1348626.3	wgs	PATRIC	1348626 tax ID	*
[Ref.: #66792]	Bacillus circulans strain NCTC2610	1397.16	wgs	PATRIC	1397 tax ID	*
[Ref.: #66792]	Niallia circulans NCTC 2610	2814123177	draft	JGI IMG/M	1397 tax ID	*
[Ref.: #66792]	Bacillus circulans NBRC 13626	2731957657	draft	JGI IMG/M	1348626 tax ID	*

[Ref.: #2018]	GC-content	35.5 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #2018]	GC-content	35.4 mol%	Buoyant density centrifugation (BD)
[Ref.: #67770]	GC-content	35 mol%

Availability in culture collections External links

[Ref.: #2018]

Culture collection no.

DSM 11, ATCC 4513, CCM 2048, JCM 2504, LMG 13261, NCIB 9374, NCTC 2610, CCUG 7416, ATCC 9140, ATCC 24, BCRC 10605, CECT 10, CIP 52.75, HAMBI 1911, IAM 12462, IAM 14175, IFO 13626, KCTC 3347, LMG 6926, NBRC 13626, NCCB 75011, NCFB 1775, NCIMB 9374, NRRL B-378, NRRL B-380, VKM B-1242, VTT E-95570

[Ref.: #20218]

Associated Passport(s) in StrainInfo

39259, 39252, 39255, 39264, 39249, 94151, 39272

References

#2018

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37735 ; Curators of the CIP;
#44985 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 7416

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

* These data were automatically processed and therefore are not curated

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