Name: Pediococcus inopinatus 236b
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6385

Type strain:

Species: Pediococcus inopinatus

Strain Designation: 236b

Culture col. no.: CCUG 38496, DSM 20285, ATCC 49902, NCIMB 12564, JCM 12518, BCRC 12841, CCM 3451, CECT 4784, CGMCC 1.6505, CIP 102406, KCTC 3653, LMG 11409, NCFB 2932, VTT E-96661

Strain history: CIP <- 1986, DSM <- W. Back, Firma Döhler GmbH, Darmstadt, Germany: strain 236b

NCBI tax ID(s): 114090 (species)

SI-ID 3820

LMG 11409, ATCC 49902, CCM 3451, CIP 102406, NCIMB 12564, CCUG 38496, NCFB2932, CECT 4784, CCRC 12841, KCTC 3653, BCRC 12841, JCM 12518, VTT E-96661, DSM 20285

Other strains from Pediococcus inopinatus

P. inopinatus 206c, DSM 20287, CCUG 43284, CCM ...

Section

Pediococcus inopinatus 236b is an aerobe, mesophilic bacterium that was isolated from brewery yeast.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Pediococcus*
	Species	**Pediococcus inopinatus**
	Full Scientific Name (LPSN)	Pediococcus inopinatus Back 1988

Information on morphological and physiological properties Morphology

[Ref.: #120134]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #120134]	Cell shape	coccus-shaped

[Ref.: #120134]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.684

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8691]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #8691]

Culture medium growth

[Ref.: #8691]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8691]

Culture medium composition

expand / minimize

[Ref.: #39666]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #39666]

Culture medium growth

[Ref.: #39666]

Culture medium composition

expand / minimize

[Ref.: #120134]

Culture medium

CIP Medium 40

[Ref.: #120134]

Culture medium growth

[Ref.: #120134]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #120134]

Culture medium

CIP Medium 41

[Ref.: #120134]

Culture medium growth

[Ref.: #120134]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #8691]		growth	30 °C
[Ref.: #39666]		growth	30 °C
[Ref.: #54291]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #120134]		growth	15-30 °C
[Ref.: #120134]	no	growth	41 °C
[Ref.: #120134]	no	growth	45 °C

[Ref.: #8691]	Temperature range	mesophilic
[Ref.: #39666]	Temperature range	mesophilic
[Ref.: #54291]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #120134]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #54291]	Oxygen tolerance	aerobe
[Ref.: #54291]	Oxygen tolerance	anaerobe
[Ref.: #120134]	Oxygen tolerance	facultative anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.985

[Ref.: #8691]	Murein short key	A11.31
[Ref.: #8691]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #120134]	nitrate ChEBI	-	reduction
[Ref.: #120134]	nitrate ChEBI	+	respiration
[Ref.: #120134]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #120134]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120134]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120134]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120134]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120134]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120134]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #120134]	8963	not determinedn.d.	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+/-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120134]	7060	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8691]	Sample type/isolated from	brewery yeast

[Ref.: #54291]	Sample type/isolated from	Brewery yeast

[Ref.: #67770]	Sample type/isolated from	Beer yeast

[Ref.: #120134]	Sample type/isolated from	Food, Brewery yeast
* marker position based on {}

Isolation sources categories

#Host

#Yeast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC145572 (>99% sequence identity) for Pediococcus from Microbeatlas

Aquatic Samples	624
Soil Samples	421
Animal Samples	11554
Plant Samples	443
Total Samples	13042

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8691]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120134]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pediococcus inopinatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 12518	LC145572	1520	ENA	114090 tax ID
[Ref.: #20218]	Pediococcus inopinatus clone P37 16S ribosomal RNA gene, partial sequence	AF404741	518	ENA	114090 tax ID	*
[Ref.: #20218]	Pediococcus inopinatus clone P37 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF405385	547	ENA	114090 tax ID	*
[Ref.: #20218]	Pediococcus inopinatus 16S rRNA gene, strain DSM 20285	AJ271383	1551	ENA	114090 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pediococcus inopinatus DSM 20285	GCA_001438725	contig	GenBank	114090 tax ID
[Ref.: #66792]	Pediococcus inopinatus DSM 20285	GCA_002982135	complete	GenBank	114090 tax ID	*
[Ref.: #66792]	Pediococcus inopinatus strain DSM 20285	114090.5	complete	PATRIC	114090 tax ID	*
[Ref.: #66792]	Pediococcus inopinatus strain DSM 20285	114090.3	wgs	PATRIC	114090 tax ID	*
[Ref.: #66792]	Pediococcus inopinatus DSM 20285	2806310833	complete	JGI IMG/M	114090 tax ID	*
[Ref.: #66792]	Pediococcus inopinatus DSM 20285	2660238412	draft	JGI IMG/M	114090 tax ID	*

[Ref.: #8691]

GC-content

39.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pediococcus inopinatus DSM 20285 NCBI: GCA_002982135.1
[Ref.: #69481]	spore-forming	no	78	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pediococcus inopinatus DSM 20285 NCBI: GCA_002982135.1
[Ref.: #69480]	flagellated	no	98.319	no
[Ref.: #69480]	gram-positive	yes	94.902	no
[Ref.: #69480]	anaerobic	no	93.079	no
[Ref.: #69480]	halophile	yes	93.516	no
[Ref.: #69480]	spore-forming	no	95.471	no
[Ref.: #69480]	glucose-util	yes	92.085	no
[Ref.: #69480]	aerobic	no	96.844	no
[Ref.: #69480]	thermophile	no	99.427	no
[Ref.: #69480]	motile	no	94.044	no
[Ref.: #69480]	glucose-ferment	yes	87.617	no

Availability in culture collections External links

[Ref.: #8691]

Culture collection no.

CCUG 38496, DSM 20285, ATCC 49902, NCIMB 12564, JCM 12518, BCRC 12841, CCM 3451, CECT 4784, CGMCC 1.6505, CIP 102406, KCTC 3653, LMG 11409, NCFB 2932, VTT E-96661

[Ref.: #75858]

SI-ID 3820

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pediococcus ethanolidurans sp. nov., isolated from the walls of a distilled-spirit-fermenting cellar.	Liu L, Zhang B, Tong H, Dong X	Int J Syst Evol Microbiol	10.1099/ijs.0.64407-0	2006	*
Phylogeny	Pediococcus cellicola sp. nov., a novel lactic acid coccus isolated from a distilled-spirit-fermenting cellar.	Zhang B, Tong H, Dong X	Int J Syst Evol Microbiol	10.1099/ijs.0.63778-0	2005	*

References

#8691

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20285

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39666 ; Curators of the CIP;
#54291 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 38496

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75858

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3820.1 )

#120134 Collection of Institut Pasteur ; Curators of the CIP; CIP 102406
* These data were automatically processed and therefore are not curated

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Pediococcus inopinatus DSM 20285

Pediococcus inopinatus DSM 20285

Change proposal

Change proposal