Name: Kineosporia babensis VN05A0415
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6327

Type strain:

Species: Kineosporia babensis

Strain Designation: VN05A0415

Culture col. no.: DSM 45444, JCM 31032, NBCR 104154, VTCC A-0961, NBRC 104154

Strain history: DSM 45444 <-- NBRC 104154 <-- Y. Sakiyama; NITE, Japan and D. V. Hop; Vietnam Natl. Univ., Vietnam; VN05A0415.

NCBI tax ID(s): 499548 (species)

SI-ID 408238

DSM 45444

Other strains from Kineosporia babensis

K. babensis JCM 16804, VTCC A-1732

Section

Kineosporia babensis VN05A0415 is a spore-forming, mesophilic bacterium that was isolated from plant litter.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kineosporiales*
	Family	*Kineosporiaceae*
	Genus	*Kineosporia*
	Species	**Kineosporia babensis**
	Full Scientific Name (LPSN)	Kineosporia babensis Sakiyama et al. 2009

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16833]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #16833]

Culture medium growth

[Ref.: #16833]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16833]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16833]	growth	28 °C
[Ref.: #28973]	growth	10-28 °C
[Ref.: #28973]	optimum	19 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #16833]	Temperature range	mesophilic
[Ref.: #28973]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #28973]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #28973]		NaCl		growth	0-3	%
[Ref.: #28973]		NaCl		optimum	1.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28973]	arabinose ChEBI	+	carbon source
[Ref.: #28973]	cellobiose ChEBI	+	carbon source
[Ref.: #28973]	esculin ChEBI	+	hydrolysis
[Ref.: #28973]	fructose ChEBI	+	carbon source
[Ref.: #28973]	galactose ChEBI	+	carbon source
[Ref.: #28973]	glucose ChEBI	+	carbon source
[Ref.: #28973]	lactose ChEBI	+	carbon source
[Ref.: #28973]	maltose ChEBI	+	carbon source
[Ref.: #28973]	mannitol ChEBI	+	carbon source
[Ref.: #28973]	melibiose ChEBI	+	carbon source
[Ref.: #28973]	myo-inositol ChEBI	+	carbon source
[Ref.: #28973]	raffinose ChEBI	+	carbon source
[Ref.: #28973]	rhamnose ChEBI	+	carbon source
[Ref.: #28973]	ribose ChEBI	+	carbon source
[Ref.: #28973]	salicin ChEBI	+	carbon source
[Ref.: #28973]	sorbitol ChEBI	+	carbon source
[Ref.: #28973]	sucrose ChEBI	+	carbon source
[Ref.: #28973]	trehalose ChEBI	+	carbon source
[Ref.: #28973]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16833]	Sample type/isolated from	plant litter
[Ref.: #16833]	Geographic location (country and/or sea, region)	Ba Be National Park, Bac Kan
[Ref.: #16833]	Country	Vietnam
[Ref.: #16833]	Country ISO 3 Code	VNM
[Ref.: #16833]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Plant litter from the mountainside at Ba Be National Park, Bac Kan Province, northern Vietnam
[Ref.: #67770]	Geographic location (country and/or sea, region)	Bac Kan Province
[Ref.: #67770]	Country	Vietnam
[Ref.: #67770]	Country ISO 3 Code	VNM
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	-
#Host Body Product	#Plant	#Plant litter (Forest)
#Host Body Product	#Plant	#Plant litter (Forest)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB377116 (>99% sequence identity) for Kineosporia babensis from Microbeatlas

Aquatic Samples	9
Soil Samples	38
Animal Samples	15
Plant Samples	2
Total Samples	64

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16833]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16833]	Kineosporia babensis gene for 16S rRNA, partial sequence, strain: VN05A0415 (= NBRC 104154)	AB377116	1352	ENA	499548 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kineosporia babensis JCM 31032	GCA_021129305	contig	GenBank	499548 tax ID	*

[Ref.: #16833]	GC-content	69-70 mol%
[Ref.: #67770]	GC-content	69-70 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kineosporia babensis JCM 31032 NCBI: GCA_021129305.1
[Ref.: #69480]	flagellated	no	90.412	no
[Ref.: #69480]	gram-positive	yes	83.266	no
[Ref.: #69480]	anaerobic	no	98.984	no
[Ref.: #69480]	aerobic	yes	86.613	no
[Ref.: #69480]	halophile	no	95.597	no
[Ref.: #69480]	spore-forming	yes	87.657	yes
[Ref.: #69480]	motile	yes	60.911	no
[Ref.: #69480]	thermophile	no	99.777	yes
[Ref.: #69480]	glucose-util	yes	87.919	yes
[Ref.: #69480]	glucose-ferment	no	83.592	no

Availability in culture collections External links

[Ref.: #16833]

Culture collection no.

DSM 45444, JCM 31032, NBCR 104154, VTCC A-0961, NBRC 104154

[Ref.: #75801]

SI-ID 408238

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces corallincola and Kineosporia corallincola sp. nov., two new coral-derived marine actinobacteria.	Buangrab K, Sutthacheep M, Yeemin T, Harunari E, Igarashi Y, Sripreechasak P, Kanchanasin P, Tanasupawat S, Phongsopitanun W	Int J Syst Evol Microbiol	10.1099/ijsem.0.005249	2022	*
Phylogeny	Kineosporia babensis sp. nov., isolated from plant litter in Vietnam.	Sakiyama Y, Thao NK, Giang NM, Miyadoh S, Hop DV, Ando K	Int J Syst Evol Microbiol	10.1099/ijs.0.002907-0	2009	*

References

#16833

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45444

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28973

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25409 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75801

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408238.1 )

#25409

IJSEM 59 2009 ( DOI 10.1099/ijs.0.002907-0 , PubMed 19244439 )

* These data were automatically processed and therefore are not curated

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Kineosporia babensis JCM 31032

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