Name: Janibacter melonis CM2104
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6263

Type strain:

Species: Janibacter melonis

Strain Designation: CM2104

Culture col. no.: CCUG 54528, CIP 108643, DSM 16063, JCM 12321, KCTC 9987, NBRC 107855

Strain history: CIP <- 2005, JCM <- J. H. Yoon: strain CM2104

NCBI tax ID(s): 1216971 (strain), 262209 (species)

SI-ID 134427

DSM 16063, JCM 12321, KCTC 9987, CIP 108643, CCUG 54528

Special Collections

Other strains from Janibacter melonis

Section

Janibacter melonis CM2104 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from oriental melon.

coccus-shaped
Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Intrasporangiaceae*
	Genus	*Janibacter*
	Species	**Janibacter melonis**
	Full Scientific Name (LPSN)	Janibacter melonis Yoon et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #31267]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #120887]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %92.564

[Ref.: #31267]	Cell length	0.9 µm

[Ref.: #31267]	Cell width	0.9 µm

[Ref.: #31267]	Cell shape	coccus-shaped
[Ref.: #120887]	Cell shape	coccus-shaped

[Ref.: #31267]	Motility	no
[Ref.: #120887]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91

[Ref.: #19739]	Colony color	Ivory (1014)
[Ref.: #19739]	Incubation period	10-14 days
[Ref.: #19739]	Cultivation medium used	ISP 2

[Ref.: #19739]	Colony color	Ivory (1014)
[Ref.: #19739]	Incubation period	10-14 days
[Ref.: #19739]	Cultivation medium used	ISP 3

[Ref.: #19739]	Colony color	Ivory (1014)
[Ref.: #19739]	Incubation period	10-14 days
[Ref.: #19739]	Cultivation medium used	ISP 4

[Ref.: #19739]	Colony color	Ivory (1014)
[Ref.: #19739]	Incubation period	10-14 days
[Ref.: #19739]	Cultivation medium used	ISP 5

[Ref.: #19739]	Colony color	Ivory (1014)
[Ref.: #19739]	Incubation period	10-14 days
[Ref.: #19739]	Cultivation medium used	ISP 6

[Ref.: #19739]	Colony color	Ivory (1014)
[Ref.: #19739]	Incubation period	10-14 days
[Ref.: #19739]	Cultivation medium used	ISP 7

[Ref.: #60216]	Incubation period	2 days

[Ref.: #19739]	Multicellular complex forming ability	no
[Ref.: #19739]	Medium Name (multicellularity)	ISP 2

[Ref.: #19739]	Multicellular complex forming ability	no
[Ref.: #19739]	Medium Name (multicellularity)	ISP 3

[Ref.: #19739]	Multicellular complex forming ability	no
[Ref.: #19739]	Medium Name (multicellularity)	ISP 4

[Ref.: #19739]	Multicellular complex forming ability	no
[Ref.: #19739]	Medium Name (multicellularity)	ISP 5

[Ref.: #19739]	Multicellular complex forming ability	no
[Ref.: #19739]	Medium Name (multicellularity)	ISP 6

[Ref.: #19739]	Multicellular complex forming ability	no
[Ref.: #19739]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6249]

Culture medium

RICH MEDIUM (DSMZ Medium 736)

[Ref.: #6249]

Culture medium growth

[Ref.: #6249]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6249]

Culture medium composition

expand / minimize

[Ref.: #6249]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #6249]

Culture medium growth

[Ref.: #6249]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6249]

Culture medium composition

expand / minimize

[Ref.: #19739]

Culture medium

ISP 2

[Ref.: #19739]

Culture medium growth

[Ref.: #19739]

Culture medium composition

expand / minimize

[Ref.: #19739]

Culture medium

ISP 3

[Ref.: #19739]

Culture medium growth

[Ref.: #19739]

Culture medium composition

expand / minimize

[Ref.: #19739]

Culture medium

ISP 4

[Ref.: #19739]

Culture medium growth

[Ref.: #19739]

Culture medium composition

expand / minimize

[Ref.: #19739]

Culture medium

ISP 5

[Ref.: #19739]

Culture medium growth

[Ref.: #19739]

Culture medium composition

expand / minimize

[Ref.: #19739]

Culture medium

ISP 6

[Ref.: #19739]

Culture medium growth

[Ref.: #19739]

Culture medium composition

expand / minimize

[Ref.: #19739]

Culture medium

ISP 7

[Ref.: #19739]

Culture medium growth

[Ref.: #19739]

Culture medium composition

expand / minimize

[Ref.: #40492]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #40492]

Culture medium growth

[Ref.: #40492]

Culture medium composition

expand / minimize

[Ref.: #120887]

Culture medium

CIP Medium 112

[Ref.: #120887]

Culture medium growth

[Ref.: #120887]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #120887]

Culture medium

CIP Medium 72

[Ref.: #120887]

Culture medium growth

[Ref.: #120887]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6249]		growth	28 °C
[Ref.: #19739]		optimum	28 °C
[Ref.: #31267]		growth	10-40 °C
[Ref.: #31267]		optimum	30 °C
[Ref.: #40492]		growth	30 °C
[Ref.: #60216]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #67771]		growth	30 °C
[Ref.: #120887]		growth	15-37 °C
[Ref.: #120887]	no	growth	10 °C
[Ref.: #120887]	no	growth	41 °C
[Ref.: #120887]	no	growth	45 °C

	pH	Kind of pH		pH
[Ref.: #31267]			optimum	7
[Ref.: #31267]			growth	5.5-7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31267]	Oxygen tolerance	aerobe
[Ref.: #60216]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #120887]	Oxygen tolerance	obligate aerobe

[Ref.: #31267]

Ability of spore formation

	Salt	Tested relation		Salt conc.
[Ref.: #31267]	NaCl		growth	02-06	%
[Ref.: #31267]	NaCl		optimum	4	%
[Ref.: #120887]	NaCl		growth	0-4	%
[Ref.: #120887]	NaCl	no	growth	6	%
[Ref.: #120887]	NaCl	no	growth	8	%
[Ref.: #120887]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31267]	acetate ChEBI	+	carbon source
[Ref.: #19739]	arabinose ChEBI	-
[Ref.: #19739]	cellulose ChEBI	+
[Ref.: #31267]	citrate ChEBI	+	carbon source
[Ref.: #120887]	citrate ChEBI	+	carbon source
[Ref.: #31267]	esculin ChEBI	+	hydrolysis
[Ref.: #120887]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #31267]	formate ChEBI	+	carbon source
[Ref.: #19739]	fructose ChEBI	+
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #19739]	glucose ChEBI	+
[Ref.: #120887]	hippurate ChEBI	+	hydrolysis
[Ref.: #31267]	malate ChEBI	+	carbon source
[Ref.: #19739]	mannitol ChEBI	+
[Ref.: #19739]	myo-inositol ChEBI	+
[Ref.: #31267]	nitrate ChEBI	+	reduction
[Ref.: #120887]	nitrate ChEBI	+	reduction
[Ref.: #120887]	nitrate ChEBI	-	respiration
[Ref.: #120887]	nitrite ChEBI	-	reduction
[Ref.: #19739]	raffinose ChEBI	-
[Ref.: #19739]	rhamnose ChEBI	-
[Ref.: #19739]	sucrose ChEBI	+
[Ref.: #68379]	sucrose ChEBI	+	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #19739]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #120887]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #120887]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120887]		acetoin ChEBI	-
[Ref.: #120887]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #120887]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120887]	amylase	+
[Ref.: #120887]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #120887]	caseinase	-	3.4.21.50
[Ref.: #31267]	catalase	+	1.11.1.6
[Ref.: #120887]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #120887]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120887]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #120887]	gelatinase	+
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #120887]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120887]	lipase	-
[Ref.: #120887]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120887]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120887]	oxidase	-
[Ref.: #120887]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #120887]	tryptophan deaminase	-
[Ref.: #120887]	tween esterase	+
[Ref.: #120887]	urease	-	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120887]	2850	not determinedn.d.	+	+	+	+	+	+	-	+	-	+	+	+	+	+	+	+	+	+	-	+	+	+	-	-	-	+	+	+	-	+	-	-	+	+	+	+	-	+	-	-	-	+	-	+	-	+	-	-	+	-	+	+	-	+	+	-	-	-	-	-	+	-	-	-	-	-	+	-	-	+	+	-	+	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	+	+	+	-	+	+	+	+	+

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19739]	283	not determinedn.d.	-	-	-	-	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	+	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19739]	563	not determinedn.d.	-	+	+	+	+	+	-	+	-	-	-	-	-	-	+	+	-	-	-
[Ref.: #120887]	11354	-	+	+	+	-	+	-	-	+	-	+	-	-	-	-	+	+	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	myo-inositol biosynthesis	100	10 of 10
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	phenol degradation	80	16 of 20
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	purine metabolism	71.28	67 of 94
[Ref.: #66794]	Entner Doudoroff pathway	70	7 of 10
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	pyrimidine metabolism	68.89	31 of 45
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	NAD metabolism	66.67	12 of 18
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	tryptophan metabolism	65.79	25 of 38
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	lysine metabolism	64.29	27 of 42
[Ref.: #66794]	pentose phosphate pathway	63.64	7 of 11
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	androgen and estrogen metabolism	62.5	10 of 16
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	flavin biosynthesis	60	9 of 15
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	oxidative phosphorylation	59.34	54 of 91
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	57.14	4 of 7
[Ref.: #66794]	arginine metabolism	54.17	13 of 24
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	methionine metabolism	53.85	14 of 26
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	tetrahydrofolate metabolism	50	7 of 14
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	catecholamine biosynthesis	50	2 of 4
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	degradation of sugar acids	48	12 of 25
[Ref.: #66794]	3-phenylpropionate degradation	46.67	7 of 15
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	carotenoid biosynthesis	45.45	10 of 22
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	44.44	4 of 9
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	polyamine pathway	43.48	10 of 23
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	degradation of pentoses	39.29	11 of 28
[Ref.: #66794]	vitamin B1 metabolism	38.46	5 of 13
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	glycine metabolism	30	3 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6249]	Sample type/isolated from	oriental melon
[Ref.: #6249]	Country	Republic of Korea
[Ref.: #6249]	Country ISO 3 Code	KOR
[Ref.: #6249]	Continent	Asia

[Ref.: #60216]	Sample type/isolated from	Melon,abnormally spoiled oriental melon
[Ref.: #60216]	Country	Republic of Korea
[Ref.: #60216]	Country ISO 3 Code	KOR
[Ref.: #60216]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Abnormally spoiled oriental melon (Cucumis melo)
[Ref.: #67770]	Host species	Cucumis melo
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From Melon
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #120887]	Sample type/isolated from	Food, Abnormally spoiled oriental melon (Cucumis melo)
[Ref.: #120887]	Country	Republic of Korea
[Ref.: #120887]	Country ISO 3 Code	KOR
[Ref.: #120887]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Plant

#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY522568 (>99% sequence identity) for Janibacter melonis subclade from Microbeatlas

Aquatic Samples	41
Soil Samples	27
Animal Samples	1135
Plant Samples	25
Total Samples	1228

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6249]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19739]	Biosafety level	1	Risk group (German classification)
[Ref.: #120887]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31267]	Janibacter melonis strain CM2104 16S ribosomal RNA gene, partial sequence	AY522568	1479	GenBank ENA	262209 tax ID
[Ref.: #20218]	Janibacter melonis DNA, 16S-23S rRNA spacer region sequence	AB292735	402	GenBank ENA	262209 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Janibacter melonis NBRC107855	GCA_020567375	scaffold	GenBank ENA	262209 tax ID	*

[Ref.: #31267]	GC-content	73 mol%
[Ref.: #67770]	GC-content	73 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Janibacter melonis NBRC107855 NCBI: GCA_020567375.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.564	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.331	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.66	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	67.703	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	yes

Availability in culture collections External links

[Ref.: #6249]

Culture collection no.

CCUG 54528, CIP 108643, DSM 16063, JCM 12321, KCTC 9987, NBRC 107855

[Ref.: #75740]

SI-ID 134427

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence of the Marine Janibacter Sp. Strain HTCC2649.	Thrash JC, Cho JC, Bertagnolli AD, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ	J Bacteriol	10.1128/JB.01298-10	2010	*
Phylogeny	Janibacter melonis sp. nov., isolated from abnormally spoiled oriental melon in Korea.	Yoon JH, Lee HB, Yeo SH, Choi JE	Int J Syst Evol Microbiol	10.1099/ijs.0.63167-0	2004	*

References

#6249

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16063

#19739

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31267

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27587 (see below)

#40492 ; Curators of the CIP;
#60216 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54528

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75740

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134427.1 )

#120887 Collection of Institut Pasteur ; Curators of the CIP; CIP 108643

#27587

IJSEM 1975 2004 ( DOI 10.1099/ijs.0.63167-0 , PubMed 15545420 )

* These data were automatically processed and therefore are not curated

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Janibacter melonis NBRC107855

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