Janibacter melonis (CCUG 54528, CIP 108643, DSM 16063)

Name: Janibacter melonis (CCUG 54528, CIP 108643, DSM 16063)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6263

Type strain

Strain Designation CM2104

Culture col. no. CCUG 54528 CIP 108643 DSM 16063 JCM 12321 KCTC 9987 2 more

NCBI tax ID(s) 1216971 262209

Special Collections DSMZ CCUG JCM KCTC CIP Wink compendium Literature strains

History <- J.-H. Yoon; CM2104 J.-H. Yoon CM2104. <- JH Yoon, KRIBB CIP <- 2005, JCM <- J. H. Yoon: strain CM2104

Links

Janibacter melonis CM2104 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from oriental melon.

Gram-positive coccus-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 134427

NBRC 107855,DSM 16063,JCM 12321,KCTC 9987,CIP 108643,CCUG 54528

@ref 20215

Last LPSN update 2026-02-09 11:19:10

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Intrasporangiaceae

Genus Janibacter

Species Janibacter melonis

Full scientific name Janibacter melonis Yoon et al. 2004

BacDive ID	Other strains from **Janibacter melonis** (2)	Type strain
6264	J. melonis CM2110, DSM 16064
161215	J. melonis JCM 12322, KCTC 9988

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31267	positive	0.9 µm	0.9 µm	coccus-shaped
67771	positive
120887	positive			coccus-shaped
125438					91
125438	positive				92.564
125439	positive				99.7

Colony morphology

@ref	Colony color	Incubation period	Medium used
19739	Ivory (1014)	10-14 days	ISP 2
19739	Ivory (1014)	10-14 days	ISP 3
19739	Ivory (1014)	10-14 days	ISP 4
19739	Ivory (1014)	10-14 days	ISP 5
19739	Ivory (1014)	10-14 days	ISP 6
19739	Ivory (1014)	10-14 days	ISP 7
60216		2 days
120887

Multicellular morphology

@ref	Forms multicellular complex	Medium name
19739		ISP 2
19739		ISP 3
19739		ISP 4
19739		ISP 5
19739		ISP 6
19739		ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6249	RICH MEDIUM (DSMZ Medium 736)	Medium recipe at MediaDive	Name: RICH MEDIUM (DSMZ Medium 736) Composition: Agar 20.0 g/l Bacto peptone 10.0 g/l Yeast extract 5.0 g/l Malt extract 5.0 g/l Casamino acids 5.0 g/l Glycerol 2.0 g/l Meat extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Tween 80 0.05 g/l Distilled water
6249	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
19739	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19739	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19739	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19739	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19739	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19739	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
40492	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120887	CIP Medium 112	Medium recipe at CIP
120887	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6249	positive	growth	28	mesophilic
19739	positive	optimum	28	mesophilic
31267	positive	growth	10-40
31267	positive	optimum	30	mesophilic
40492	positive	growth	30	mesophilic
60216	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic
67771	positive	growth	30	mesophilic
120887	positive	growth	15-37
120887	negative	growth	10
120887	negative	growth	41
120887	negative	growth	45

Culture pH

@ref	Ability	Type	PH
31267	positive	optimum	7
31267	positive	growth	5.5-7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31267	aerobe
60216	aerobe
67771	aerobe
120887	obligate aerobe
125439	facultative anaerobe	91.3

Spore formation

31267

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31267	NaCl	positive	growth	02-06 %
31267	NaCl	positive	optimum	4 %
120887	NaCl	positive	growth	0-4 %
120887	NaCl		growth	6 %
120887	NaCl		growth	8 %
120887	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-8(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31267	30089 ChEBI	acetate	+	carbon source
19739	22599 ChEBI	arabinose	-
19739	62968 ChEBI	cellulose	+
31267	16947 ChEBI	citrate	+	carbon source
120887	16947 ChEBI	citrate	+	carbon source
31267	4853 ChEBI	esculin	+	hydrolysis
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
120887	4853 ChEBI	esculin	+	hydrolysis
31267	15740 ChEBI	formate	+	carbon source
19739	28757 ChEBI	fructose	+
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
19739	17234 ChEBI	glucose	+
120887	606565 ChEBI	hippurate	+	hydrolysis
31267	25115 ChEBI	malate	+	carbon source
19739	29864 ChEBI	mannitol	+
19739	17268 ChEBI	myo-inositol	+
31267	17632 ChEBI	nitrate	+	reduction
120887	17632 ChEBI	nitrate	+	reduction
120887	17632 ChEBI	nitrate	-	respiration
120887	16301 ChEBI	nitrite	-	reduction
19739	16634 ChEBI	raffinose	-
19739	26546 ChEBI	rhamnose	-
19739	17992 ChEBI	sucrose	+
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne
19739	18222 ChEBI	xylose	-

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
120887	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120887	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
120887	15688 ChEBI	acetoin	-
120887	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
120887	alcohol dehydrogenase	-	1.1.1.1
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120887	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
120887	beta-galactosidase	+	3.2.1.23
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
120887	caseinase	-	3.4.21.50
31267	catalase	+	1.11.1.6
120887	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
120887	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120887	gamma-glutamyltransferase	+	2.3.2.2
120887	gelatinase	+
68379	gelatinase	-		from API Coryne
120887	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
120887	lipase	-
120887	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
120887	ornithine decarboxylase	-	4.1.1.17
120887	oxidase	-
120887	phenylalanine ammonia-lyase	-	4.3.1.24
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
120887	tryptophan deaminase	-
120887	tween esterase	+
120887	urease	-	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	starch degradation	100	10 of 10
66794	palmitate biosynthesis	100	22 of 22
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	adipate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	myo-inositol biosynthesis	100	10 of 10
66794	glycogen metabolism	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	aerobactin biosynthesis	100	1 of 1
66794	vitamin K metabolism	100	5 of 5
66794	denitrification	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	photosynthesis	85.71	12 of 14
66794	leucine metabolism	84.62	11 of 13
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	vitamin B12 metabolism	82.35	28 of 34
66794	propionate fermentation	80	8 of 10
66794	phenol degradation	80	16 of 20
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	citric acid cycle	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	isoleucine metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	proline metabolism	72.73	8 of 11
66794	metabolism of disaccharids	72.73	8 of 11
66794	alanine metabolism	72.41	21 of 29
66794	glutathione metabolism	71.43	10 of 14
66794	heme metabolism	71.43	10 of 14
66794	tyrosine metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	purine metabolism	71.28	67 of 94
66794	Entner Doudoroff pathway	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	pyrimidine metabolism	68.89	31 of 45
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	NAD metabolism	66.67	12 of 18
66794	acetoin degradation	66.67	2 of 3
66794	tryptophan metabolism	65.79	25 of 38
66794	non-pathway related	65.79	25 of 38
66794	glycolysis	64.71	11 of 17
66794	lysine metabolism	64.29	27 of 42
66794	pentose phosphate pathway	63.64	7 of 11
66794	d-xylose degradation	63.64	7 of 11
66794	degradation of sugar alcohols	62.5	10 of 16
66794	ketogluconate metabolism	62.5	5 of 8
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	lipid metabolism	61.29	19 of 31
66794	flavin biosynthesis	60	9 of 15
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	oxidative phosphorylation	59.34	54 of 91
66794	histidine metabolism	58.62	17 of 29
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	arginine metabolism	54.17	13 of 24
66794	sulfate reduction	53.85	7 of 13
66794	methionine metabolism	53.85	14 of 26
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	tetrahydrofolate metabolism	50	7 of 14
66794	toluene degradation	50	2 of 4
66794	CMP-KDO biosynthesis	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	catecholamine biosynthesis	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	butanoate fermentation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	degradation of sugar acids	48	12 of 25
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	ascorbate metabolism	45.45	10 of 22
66794	vitamin B6 metabolism	45.45	5 of 11
66794	carotenoid biosynthesis	45.45	10 of 22
66794	lipid A biosynthesis	44.44	4 of 9
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	polyamine pathway	43.48	10 of 23
66794	lipoate biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	cellulose degradation	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	degradation of pentoses	39.29	11 of 28
66794	vitamin B1 metabolism	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	degradation of hexoses	33.33	6 of 18
66794	methane metabolism	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	glycine metabolism	30	3 of 10
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	cyclohexanol degradation	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
19739	not determinedn.d.	-	-	-	-	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	+	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19739	not determinedn.d.	-	+	+	+	+	+	-	+	-	-	-	-	-	-	+	+	-	-	-
120887	-	+	+	+	-	+	-	-	+	-	+	-	-	-	-	+	+	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
120887	not determinedn.d.	+	+	+	+	+	+	-	+	-	+	+	+	+	+	+	+	+	+	-	+	+	+	-	-	-	+	+	+	-	+	-	-	+	+	+	+	-	+	-	-	-	+	-	+	-	+	-	-	+	-	+	+	-	+	+	-	-	-	-	-	+	-	-	-	-	-	+	-	-	+	+	-	+	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	+	+	+	-	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Plant	#Fruit (Seed)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
6249	oriental melon		Republic of Korea	KOR	Asia
60216	Melon,abnormally spoiled oriental melon		Republic of Korea	KOR	Asia
67770	Abnormally spoiled oriental melon (Cucumis melo)	Cucumis melo	Republic of Korea	KOR	Asia
67771	From Melon		Republic of Korea	KOR	Asia
120887	Food, Abnormally spoiled oriental melon (Cucumis melo)		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY522568 (>99% sequence identity) for Janibacter melonis subclade from Microbeatlas

Aquatic Samples	41
Soil Samples	27
Animal Samples	1135
Plant Samples	25
Total Samples	1228

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6249	1	Risk group (German classification) According to TRBA 466
19739	1	Risk group (German classification) According to TRBA 466
120887	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2056737v1 assembly for Janibacter melonis NBRC107855	scaffold	GCA_020567375	262209.22	262209	67.42
124043	ASM3952756v1 assembly for Janibacter melonis JCM 12321	scaffold	GCA_039527565		262209	42.64

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Janibacter melonis DNA, 16S-23S rRNA spacer region sequence	AB292735	402		262209
31267	Janibacter melonis strain CM2104 16S ribosomal RNA gene, partial sequence	AY522568	1479		262209

GC content

@ref	GC-content (mol%)	Method
31267	73
67770	73	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Janibacter melonis NBRC107855
NCBI: GCA_020567375

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	74.30	no
125439	motility	BacteriaNetⓘ	no	73.50	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Janibacter melonis NBRC107855
NCBI: GCA_020567375.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.56	yes
125438	anaerobic	anaerobicⓘ	no	98.33	no
125438	aerobic	aerobicⓘ	yes	88.66	yes
125438	spore-forming	spore-formingⓘ	no	67.70	no
125438	thermophilic	thermophileⓘ	no	93.00	yes
125438	flagellated	motile2+ⓘ	no	91.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence of the Marine Janibacter Sp. Strain HTCC2649.	Thrash JC, Cho JC, Bertagnolli AD, Ferriera S, Johnson J, Vergin KL, Giovannoni SJ	J Bacteriol	10.1128/JB.01298-10	2010
Phylogeny	Janibacter melonis sp. nov., isolated from abnormally spoiled oriental melon in Korea.	Yoon JH, Lee HB, Yeo SH, Choi JE	Int J Syst Evol Microbiol	10.1099/ijs.0.63167-0	2004

References

#6249	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16063
#19739	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#27587	IJSEM 1975 2004 ( DOI 10.1099/ijs.0.63167-0 , PubMed 15545420 )
#31267	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27587
#40492	; Curators of the CIP;
#60216	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54528
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120887	Collection of Institut Pasteur ; Curators of the CIP; CIP 108643
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Janibacter melonis (CCUG 54528, CIP 108643, DSM 16063)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API coryne

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_020567375

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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