Name: Idiomarina loihiensis L2-TR
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6229

Type strain:

Species: Idiomarina loihiensis

Strain Designation: L2-TR

Culture col. no.: DSM 15497, CIP 108396, ATCC BAA-735

Strain history: CIP <- 2004, S.P. Donachie, Hawaii Univ., Honolulu, Hawaii, USA: strain L2-TR

NCBI tax ID(s): 135577 (species)

SI-ID 127994

ATCC BAA-735, DSM 15497, CIP 108396

Section

Idiomarina loihiensis L2-TR is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from hydrothermal vent fluids mixed with ambient seawater.

Gram-negative
motile
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Idiomarinaceae*
	Genus	*Idiomarina*
	Species	**Idiomarina loihiensis**
	Full Scientific Name (LPSN)	Idiomarina loihiensis Donachie et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #120644]	Gram stain	negative

[Ref.: #120644]	Cell shape	rod-shaped

[Ref.: #120644]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5958]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5958]

Culture medium growth

[Ref.: #5958]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5958]

Culture medium composition

expand / minimize

[Ref.: #37428]

Culture medium

Marine agar (MA)

[Ref.: #37428]

Culture medium growth

[Ref.: #37428]

Culture medium composition

expand / minimize

[Ref.: #120644]

Culture medium

CIP Medium 13

[Ref.: #120644]

Culture medium growth

[Ref.: #120644]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5958]		growth	30 °C
[Ref.: #37428]		growth	30 °C
[Ref.: #120644]		growth	15-41 °C
[Ref.: #120644]	no	growth	5 °C

[Ref.: #5958]	Temperature range	mesophilic
[Ref.: #37428]	Temperature range	mesophilic
[Ref.: #120644]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #120644]

Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #120644]		NaCl		growth	2-10	%
[Ref.: #120644]		NaCl	no	growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120644]	citrate ChEBI	-	carbon source
[Ref.: #120644]	esculin ChEBI	-	hydrolysis
[Ref.: #120644]	nitrate ChEBI	-	reduction
[Ref.: #120644]	nitrate ChEBI	-	respiration
[Ref.: #120644]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120644]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120644]		acetoin ChEBI	-
[Ref.: #120644]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120644]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120644]	amylase	-
[Ref.: #120644]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120644]	caseinase	-	3.4.21.50
[Ref.: #120644]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #120644]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120644]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #120644]	gelatinase	-
[Ref.: #120644]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120644]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120644]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120644]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120644]	oxidase	+
[Ref.: #120644]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #120644]	tryptophan deaminase	-
[Ref.: #120644]	tween esterase	+
[Ref.: #120644]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120644]	11147	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5958]	Sample type/isolated from	hydrothermal vent fluids mixed with ambient seawater
[Ref.: #5958]	Geographic location (country and/or sea, region)	Hawaii, Loihi submarine volcano
[Ref.: #5958]	Country	USA
[Ref.: #5958]	Country ISO 3 Code	USA
[Ref.: #5958]	Continent	North America

[Ref.: #120644]	Sample type/isolated from	Lo'ihi hydrothermal vent
[Ref.: #120644]	Geographic location (country and/or sea, region)	Hawaii
[Ref.: #120644]	Country	United States of America
[Ref.: #120644]	Country ISO 3 Code	USA
[Ref.: #120644]	Continent	North America
[Ref.: #120644]	Isolation date	1999
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF288370 (>99% sequence identity) for Idiomarina from Microbeatlas

Aquatic Samples	2509
Soil Samples	591
Animal Samples	1041
Plant Samples	163
Total Samples	4304

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5958]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120644]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5958]	Idiomarina loihiensis 16S ribosomal RNA gene, partial sequence	AF288370	1415	ENA	135577 tax ID

[Ref.: #5958]

GC-content

47.4 mol%

Availability in culture collections External links

[Ref.: #5958]

Culture collection no.

DSM 15497, CIP 108396, ATCC BAA-735

[Ref.: #75708]

SI-ID 127994

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Gene expression of terminal oxidases in two marine bacterial strains exposed to nanomolar oxygen concentrations.	Gong X, Garcia-Robledo E, Lund MB, Lehner P, Borisov SM, Klimant I, Revsbech NP, Schramm A	FEMS Microbiol Ecol	10.1093/femsec/fiy072	2018	*
Metabolism	Ca-Mg kutnahorite and struvite production by Idiomarina strains at modern seawater salinities.	Gonzalez-Munoz MT, De Linares C, Martinez-Ruiz F, Morcillo F, Martin-Ramos D, Arias JM	Chemosphere	10.1016/j.chemosphere.2008.02.010	2008	*
Phylogeny	Idiomarina loihiensis sp. nov., a halophilic gamma-Proteobacterium from the Lo'ihi submarine volcano, Hawai'i.	Donachie SP, Hou S, Gregory TS, Malahoff A, Alam M	Int J Syst Evol Microbiol	10.1099/ijs.0.02701-0	2003	*
Phylogeny	Idiomarina rhizosphaerae sp. nov. isolated from rhizosphere soil of Kalidium cuspidatum, and reclassification of Idiomarina andamanensis as Pseudidiomarina andamanensis comb. nov., and Idiomarina mangrovi as Pseudidiomarina mangrovi comb. nov.	Li LF, Xu L, Wei HM, Sun JQ	Arch Microbiol	10.1007/s00203-022-03335-5	2022	*

References

#5958

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15497

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37428 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75708

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID127994.1 )

#120644 Collection of Institut Pasteur ; Curators of the CIP; CIP 108396
* These data were automatically processed and therefore are not curated

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