Name: Hyphomonas polymorpha PS-728
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6202

Type strain:

Species: Hyphomonas polymorpha

Strain Designation: PS-728

Culture col. no.: DSM 2665, ATCC 33881, IAM 14246, JCM 21104, NBRC 102482

Strain history: IAM 14246 <-- DSM 2665 <-- R. Gebers <-- P. Hirsch PR728 (=PS728) <-- E. Pongratz.

NCBI tax ID(s): 74319 (species)

SI-ID 40741

ATCC 33881, DSM 2665, IAM 14246, KCTC 12462, NBRC 102482, JCM 21104

Other strains from Hyphomonas polymorpha

H. polymorpha PR-727, DSM 2664, ATCC 33880

Section

Hyphomonas polymorpha PS-728 is a mesophilic bacterium that was isolated from human nasal sinus infection.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Hyphomonadaceae*
	Genus	*Hyphomonas*
	Species	**Hyphomonas polymorpha**
	Full Scientific Name (LPSN)	Hyphomonas polymorpha (ex Pongratz 1957) Moore et al. 1984

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1197]

Culture medium

HYPHOMONAS MEDIUM (DSMZ Medium 281)

[Ref.: #1197]

Culture medium growth

[Ref.: #1197]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1197]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1197]			growth	30-37 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #1197]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1197]	Sample type/isolated from	human nasal sinus infection

[Ref.: #67770]	Sample type/isolated from	Human nasal sinus infection
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Human	-
#Host Body-Site	#Organ	#Nose

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF863144 (>99% sequence identity) for Hyphomonas from Microbeatlas

Aquatic Samples	3479
Soil Samples	403
Animal Samples	324
Plant Samples	59
Total Samples	4265

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1197]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1197]	Hyphomonas polymorpha DNA for 16S ribosomal RNA, strain DSM2665 (T)	AJ227813	1410	ENA	74319 tax ID
[Ref.: #67770]	Hyphomonas polymorpha gene for 16S rRNA, partial sequence, strain: NBRC 102482	AB681821	1380	ENA	74319 tax ID
[Ref.: #20218]	Hyphomonas polymorpha strain DSM 2665 16S ribosomal RNA gene, partial sequence	KF863144	1419	ENA	74319 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hyphomonas polymorpha PS728	GCA_000685315	contig	GenBank	1280954 tax ID

[Ref.: #1197]

GC-content

60.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hyphomonas polymorpha PS728 PS728 NCBI: GCA_000685315.1
[Ref.: #69480]	motile	yes	81.77	no
[Ref.: #69480]	flagellated	no	82.557	no
[Ref.: #69480]	gram-positive	no	98.455	no
[Ref.: #69480]	anaerobic	no	98.743	no
[Ref.: #69480]	halophile	no	88.017	no
[Ref.: #69480]	spore-forming	no	96.225	no
[Ref.: #69480]	glucose-util	yes	82.639	no
[Ref.: #69480]	aerobic	yes	94.084	no
[Ref.: #69480]	thermophile	no	98.512	yes
[Ref.: #69480]	glucose-ferment	no	94.054	no

Availability in culture collections External links

[Ref.: #1197]

Culture collection no.

DSM 2665, ATCC 33881, IAM 14246, JCM 21104, NBRC 102482

[Ref.: #75682]

SI-ID 40741

References

#1197

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2665

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75682

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40741.1 )

* These data were automatically processed and therefore are not curated

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Hyphomonas polymorpha PS728 PS728

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