Rubritepida flocculans H-8 | Type strain | DSM 14296, ATCC BAA-385 | BacDiveID:62

Strain identifier

BacDive ID: 62

Type strain:

Species: Rubritepida flocculans

Strain Designation: H-8

Culture col. no.: DSM 14296, ATCC BAA-385

Strain history: <- M. S. da Costa; H-8

NCBI tax ID(s): 1123072 (strain), 182403 (species)

SI-ID 100936

ATCC BAA-385, DSM 14296, CCUG 48748

Special Collections

DSMZ

Section

Rubritepida flocculans H-8 is a Gram-negative bacterium that was isolated from hot spring.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Rubritepida*
	Species	**Rubritepida flocculans**
	Full Scientific Name (LPSN)	Rubritepida flocculans Alarico et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.833

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

R3 MEDIUM (DSMZ Medium 966)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5306]			growth	50 °C

Information on physiology and metabolism Physiology and metabolism

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5306]	Sample type/isolated from	hot spring
[Ref.: #5306]	Geographic location (country and/or sea, region)	Egerszalók
[Ref.: #5306]	Country	Hungary
[Ref.: #5306]	Country ISO 3 Code	HUN
[Ref.: #5306]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Global distribution of 16S sequence AF465832 (>99% sequence identity) for Rubritepida flocculans subclade from Microbeatlas

Aquatic Samples	155
Soil Samples	29
Animal Samples	26
Plant Samples	2
Total Samples	212

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5306]	Rubritepida flocculans 16S ribosomal RNA gene, partial sequence	AF465832	1429	GenBank ENA	182403 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rubritepida flocculans DSM 14296	GCA_000425365	scaffold	GenBank ENA	1123072 tax ID	*
[Ref.: #66792]	Rubritepida flocculans DSM 14296	1123072.3	wgs	PATRIC	1123072 tax ID	*
[Ref.: #66792]	Rubritepida flocculans DSM 14296	2524614851	draft	JGI IMG/M	1123072 tax ID	*

GC-content

70.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rubritepida flocculans DSM 14296 DSM 14296 NCBI: GCA_000425365.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rubritepida flocculans DSM 14296 DSM 14296 NCBI: GCA_000425365.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.833	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	90.229	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	79.048	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.045	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	88.023	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	66.792	no

Availability in culture collections External links

Culture collection no.

DSM 14296, ATCC BAA-385

SI-ID 100936

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sabulicella rubraurantiaca gen. nov., sp. nov., a new member of the family Acetobacteraceae, isolated from desert soil.	Lin ZL, Li S, Wei QC, Lian WH, Lu CY, Xu L, Huang LN, Dong L, Li WJ	Arch Microbiol	10.1007/s00203-021-02604-z	2021	*

References

#5306

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14296

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69746

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100936.1 )

* These data were automatically processed and therefore are not curated

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