Name: Herpetosiphon geysericola GC-42
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6135

Type strain:

Species: Herpetosiphon geysericola

Strain Designation: GC-42, Hp gy1

Culture col. no.: DSM 7119, ATCC 23076, CCUG 48727

Strain history: <- H. Reichenbach, Hp gy1 <- ATCC <- R.A. Lewin, GC-42; identity of the strain not clear

NCBI tax ID(s): 70996 (species)

SI-ID 37896

ATCC 23076, DSM 7119, NCIMB 1448, CCUG 48727

Special Collections

DSMZ
CCUG

Other strains from Herpetosiphon geysericola

Section

Herpetosiphon geysericola GC-42 is an aerobe bacterium that was isolated from hot spring.

aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Chloroflexota*
	Class	*Chloroflexia*
	Order	*Herpetosiphonales*
	Family	*Herpetosiphonaceae*
	Genus	*Herpetosiphon*
	Species	**Herpetosiphon geysericola**
	Full Scientific Name (LPSN)	Herpetosiphon geysericola (Copeland 1936) Lewin 1970 (Approved Lists 1980)

	Synonym	Leptolyngbya geysericola
	Synonym	Phormidium geysericola

Information on morphological and physiological properties Morphology

[Ref.: #58308]

Incubation period

5 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3010]

Culture medium

CY-AGAR (DSMZ Medium 67)

[Ref.: #3010]

Culture medium growth

[Ref.: #3010]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3010]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3010]			growth	25 °C
[Ref.: #58308]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #58308]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3010]	Sample type/isolated from	hot spring
[Ref.: #3010]	Geographic location (country and/or sea, region)	Guadalupe Canon
[Ref.: #3010]	Country	Mexico
[Ref.: #3010]	Country ISO 3 Code	MEX
[Ref.: #3010]	Continent	North America

[Ref.: #58308]	Sample type/isolated from	Rocks bedside a hot spring
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3010]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Herpetosiphon geysericola 16S ribosomal RNA gene, partial sequence	AF039293	1417	GenBank ENA	70996 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Herpetosiphon geysericola DSM 7119	GCA_001306135	contig	GenBank ENA	70996 tax ID	*
[Ref.: #66792]	Herpetosiphon geysericola strain DSM 7119	70996.7	wgs	PATRIC	70996 tax ID	*
[Ref.: #66792]	Herpetosiphon geysericola DSM 7119	2645728042	draft	JGI IMG/M	70996 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Herpetosiphon geysericola strain DSM 7119 PATRIC: 70996.7
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Herpetosiphon geysericola strain DSM 7119 PATRIC: 70996.7
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	58.643	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	90.458	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	60.146	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	81.579	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	80.172	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	71.912	no

Availability in culture collections External links

[Ref.: #3010]

Culture collection no.

DSM 7119, ATCC 23076, CCUG 48727

[Ref.: #75622]

SI-ID 37896

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Herpetosiphon gulosus sp. nov., a filamentous predatory bacterium isolated from sandy soil and Herpetosiphon giganteus sp. nov., nom. rev.	Pan X, Kage H, Martin K, Nett M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002141	2017	*
Genetics	Draft Genome Sequence of Herpetosiphon geysericola GC-42, a Nonphototrophic Member of the Chloroflexi Class Chloroflexia.	Ward LM, Hemp J, Pace LA, Fischer WW	Genome Announc	10.1128/genomeA.01352-15	2015	*

References

#3010

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7119

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#58308 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48727

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75622

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID37896.1 )

* These data were automatically processed and therefore are not curated

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Herpetosiphon geysericola strain DSM 7119

Herpetosiphon geysericola strain DSM 7119

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