Name: Aidingimonas halophila DSM 19219
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6086

Type strain:

Species: Aidingimonas halophila

Culture col. no.: DSM 19219, CCTCC AB 207002, KCTC 12885, YIM 90637

Strain history: <- S.-K. Tang, YIM; YIM 90637

NCBI tax ID(s): 574349 (species)

SI-ID 398082

DSM 19219

Other strains from Aidingimonas halophila

A. halophila BH 017, DSM 19939

Section

Aidingimonas halophila DSM 19219 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from salt lake.

Gram-negative
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Aidingimonas*
	Species	**Aidingimonas halophila**
	Full Scientific Name (LPSN)	Aidingimonas halophila Wang et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29288]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.975

[Ref.: #29288]	Cell length	1.1 µm

[Ref.: #29288]	Cell width	0.2 µm

[Ref.: #29288]	Cell shape	rod-shaped

[Ref.: #69480]	Motility	yes Confidence in %96.881

[Ref.: #29288]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7975]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7975]

Culture medium growth

[Ref.: #7975]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7975]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7975]	growth	37 °C
[Ref.: #29288]	growth	10-45 °C
[Ref.: #29288]	optimum	37 °C

[Ref.: #7975]	Temperature range	mesophilic
[Ref.: #29288]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29288]			optimum	07-08
[Ref.: #29288]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29288]

Oxygen tolerance

facultative anaerobe

[Ref.: #29288]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.965

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29288]		NaCl		growth	01-25	%
[Ref.: #29288]		NaCl		optimum	05-10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29288]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #29288]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #29288]	acetate ChEBI	+	carbon source
[Ref.: #29288]	alanine ChEBI	+	carbon source
[Ref.: #29288]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #29288]	arabinose ChEBI	+	carbon source
[Ref.: #29288]	asparagine ChEBI	+	carbon source
[Ref.: #29288]	aspartate ChEBI	+	carbon source
[Ref.: #29288]	cellobiose ChEBI	+	carbon source
[Ref.: #29288]	citrate ChEBI	+	carbon source
[Ref.: #29288]	dextrin ChEBI	+	carbon source
[Ref.: #29288]	formate ChEBI	+	carbon source
[Ref.: #29288]	fructose ChEBI	+	carbon source
[Ref.: #29288]	fucose ChEBI	+	carbon source
[Ref.: #29288]	galactonate ChEBI	+	carbon source
[Ref.: #29288]	galactose ChEBI	+	carbon source
[Ref.: #29288]	galacturonate ChEBI	+	carbon source
[Ref.: #29288]	glucose ChEBI	+	carbon source
[Ref.: #29288]	glucuronamide ChEBI	+	carbon source
[Ref.: #29288]	glutamate ChEBI	+	carbon source
[Ref.: #29288]	glycerol ChEBI	+	carbon source
[Ref.: #29288]	glycogen ChEBI	+	carbon source
[Ref.: #29288]	histidine ChEBI	+	carbon source
[Ref.: #29288]	L-alaninamide ChEBI	+	carbon source
[Ref.: #29288]	L-arabitol ChEBI	+	carbon source
[Ref.: #29288]	lactate ChEBI	+	carbon source
[Ref.: #29288]	lactose ChEBI	+	carbon source
[Ref.: #29288]	malonate ChEBI	+	carbon source
[Ref.: #29288]	maltose ChEBI	+	carbon source
[Ref.: #29288]	mannitol ChEBI	+	carbon source
[Ref.: #29288]	mannose ChEBI	+	carbon source
[Ref.: #29288]	melibiose ChEBI	+	carbon source
[Ref.: #29288]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #29288]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #29288]	myo-inositol ChEBI	+	carbon source
[Ref.: #29288]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29288]	ornithine ChEBI	+	carbon source
[Ref.: #29288]	proline ChEBI	+	carbon source
[Ref.: #29288]	propionate ChEBI	+	carbon source
[Ref.: #29288]	raffinose ChEBI	+	carbon source
[Ref.: #29288]	rhamnose ChEBI	+	carbon source
[Ref.: #29288]	ribitol ChEBI	+	carbon source
[Ref.: #29288]	ribose ChEBI	+	carbon source
[Ref.: #29288]	serine ChEBI	+	carbon source
[Ref.: #29288]	sorbitol ChEBI	+	carbon source
[Ref.: #29288]	succinate ChEBI	+	carbon source
[Ref.: #29288]	sucrose ChEBI	+	carbon source
[Ref.: #29288]	threonine ChEBI	+	carbon source
[Ref.: #29288]	trehalose ChEBI	+	carbon source
[Ref.: #29288]	tween 20 ChEBI	+	carbon source
[Ref.: #29288]	tween 40 ChEBI	+	carbon source
[Ref.: #29288]	tween 80 ChEBI	+	carbon source
[Ref.: #29288]	uridine ChEBI	+	carbon source
[Ref.: #29288]	urocanic acid ChEBI	+	carbon source
[Ref.: #29288]	xylitol ChEBI	+	carbon source
[Ref.: #29288]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29288]	acid phosphatase	+	3.1.3.2
[Ref.: #29288]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29288]	catalase	+	1.11.1.6
[Ref.: #29288]	urease	+	3.5.1.5

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	tetrahydrofolate metabolism	100	14 of 14
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	photosynthesis	92.86	13 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	89.29	25 of 28
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	degradation of sugar acids	84	21 of 25
[Ref.: #66794]	arginine metabolism	83.33	20 of 24
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	vitamin B6 metabolism	81.82	9 of 11
[Ref.: #66794]	myo-inositol biosynthesis	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	vitamin B12 metabolism	79.41	27 of 34
[Ref.: #66794]	purine metabolism	78.72	74 of 94
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	lipid A biosynthesis	77.78	7 of 9
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	degradation of sugar alcohols	75	12 of 16
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	lipid metabolism	74.19	23 of 31
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	lysine metabolism	69.05	29 of 42
[Ref.: #66794]	histidine metabolism	68.97	20 of 29
[Ref.: #66794]	oxidative phosphorylation	67.03	61 of 91
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	carnitine metabolism	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	alanine metabolism	62.07	18 of 29
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	61.54	8 of 13
[Ref.: #66794]	sulfate reduction	61.54	8 of 13
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	tryptophan metabolism	60.53	23 of 38
[Ref.: #66794]	D-cycloserine biosynthesis	60	3 of 5
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	degradation of pentoses	57.14	16 of 28
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	polyamine pathway	56.52	13 of 23
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	ascorbate metabolism	54.55	12 of 22
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	degradation of hexoses	50	9 of 18
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	alginate biosynthesis	50	2 of 4
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	aclacinomycin biosynthesis	42.86	3 of 7
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	3-phenylpropionate degradation	40	6 of 15
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	starch degradation	30	3 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	phenol degradation	30	6 of 20
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7975]	Sample type/isolated from	salt lake
[Ref.: #7975]	Geographic location (country and/or sea, region)	Xinjiang Uygur Autonomous Region, Turpan Basin, Aiding Lake
[Ref.: #7975]	Country	China
[Ref.: #7975]	Country ISO 3 Code	CHN
[Ref.: #7975]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ418176 (>99% sequence identity) for Aidingimonas halophila from Microbeatlas

Aquatic Samples	7
Soil Samples	1
Animal Samples	4
Plant Samples
Total Samples	12

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7975]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7975]	Modicisalibacter sp. YIM 90637 16S ribosomal RNA gene, partial sequence	FJ418176	1469	ENA	574349 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aidingimonas halophila DSM 19219	GCA_900106955	scaffold	GenBank	574349 tax ID	*
[Ref.: #66792]	Aidingimonas halophila KCTC 12885	GCA_014651655	scaffold	GenBank	574349 tax ID	*
[Ref.: #66792]	Aidingimonas halophila strain DSM 19219	574349.3	wgs	PATRIC	574349 tax ID	*
[Ref.: #66792]	Aidingimonas halophila strain KCTC 12885	574349.7	wgs	PATRIC	574349 tax ID	*
[Ref.: #66792]	Aidingimonas halophila DSM 19219	2693429859	draft	JGI IMG/M	574349 tax ID	*

[Ref.: #7975]	GC-content	57.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29288]	GC-content	57-58 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aidingimonas halophila DSM 19219 NCBI: GCA_900106955.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aidingimonas halophila DSM 19219 NCBI: GCA_900106955.1
[Ref.: #69480]	motile	yes	88.671	no
[Ref.: #69480]	glucose-ferment	no	65.973	no
[Ref.: #69480]	flagellated	yes	60.361	no
[Ref.: #69480]	gram-positive	no	98.84	no
[Ref.: #69480]	anaerobic	no	98.772	no
[Ref.: #69480]	aerobic	yes	88.313	yes
[Ref.: #69480]	halophile	yes	92.189	no
[Ref.: #69480]	spore-forming	no	96.159	yes
[Ref.: #69480]	thermophile	no	97.898	yes
[Ref.: #69480]	glucose-util	yes	93.086	yes

Availability in culture collections External links

[Ref.: #7975]

Culture collection no.

DSM 19219, CCTCC AB 207002, KCTC 12885, YIM 90637

[Ref.: #75574]

SI-ID 398082

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aidingimonas halophila gen. nov., sp. nov., a moderately halophilic bacterium isolated from a salt lake.	Wang Y, Tang SK, Lou K, Lee JC, Jeon CO, Xu LH, Kim CJ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.010264-0	2009	*

References

#7975

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19219

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29288

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25704 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75574

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398082.1 )

#25704

IJSEM 3088 2009 ( DOI 10.1099/ijs.0.010264-0 , PubMed 19643876 )

* These data were automatically processed and therefore are not curated

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