Aidingimonas halophila (DSM 19219, CCTCC AB 207002, KCTC 12885)

Name: Aidingimonas halophila (DSM 19219, CCTCC AB 207002, KCTC 12885)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6086

Type strain

Culture col. no. DSM 19219 CCTCC AB 207002 KCTC 12885 YIM 90637

NCBI tax ID(s) 574349

Special Collections DSMZ KCTC Literature strains

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Aidingimonas halophila DSM 19219 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that was isolated from salt lake.

Gram-negative rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 398082

KCTC 12885,DSM 19219

@ref 20215

Last LPSN update 2025-12-16 09:48:14

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Aidingimonas

Species Aidingimonas halophila

Full scientific name Aidingimonas halophila Wang et al. 2009

BacDive ID	Other strains from **Aidingimonas halophila** (1)	Type strain
6087	A. halophila BH 017, DSM 19939

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
29288	negative	1.1 µm	0.2 µm	rod-shaped
125439	negative
125438	negative

Pigmentation

29288

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7975	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 80.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7975	positive	growth	37	mesophilic
29288	positive	growth	10-45
29288	positive	optimum	37	mesophilic

Culture pH

@ref	Ability	Type	PH
29288	positive	optimum	07-08
29288	positive	growth	05-09

Physiology and metabolism

Oxygen tolerance

29288

Oxygen tolerancefacultative anaerobe

Spore formation

@ref	Spore formation
29288
125439

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29288	NaCl	positive	growth	01-25 %
29288	NaCl	positive	optimum	05-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29288	18240 ChEBI	4-hydroxy-L-proline	+	carbon source
29288	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
29288	30089 ChEBI	acetate	+	carbon source
29288	16449 ChEBI	alanine	+	carbon source
29288	40585 ChEBI	alpha-cyclodextrin	+	carbon source
29288	22599 ChEBI	arabinose	+	carbon source
29288	22653 ChEBI	asparagine	+	carbon source
29288	35391 ChEBI	aspartate	+	carbon source
29288	17057 ChEBI	cellobiose	+	carbon source
29288	16947 ChEBI	citrate	+	carbon source
29288	23652 ChEBI	dextrin	+	carbon source
29288	15740 ChEBI	formate	+	carbon source
29288	28757 ChEBI	fructose	+	carbon source
29288	33984 ChEBI	fucose	+	carbon source
29288	24148 ChEBI	galactonate	+	carbon source
29288	28260 ChEBI	galactose	+	carbon source
29288	24175 ChEBI	galacturonate	+	carbon source
29288	17234 ChEBI	glucose	+	carbon source
29288	32323 ChEBI	glucuronamide	+	carbon source
29288	29987 ChEBI	glutamate	+	carbon source
29288	17754 ChEBI	glycerol	+	carbon source
29288	28087 ChEBI	glycogen	+	carbon source
29288	27570 ChEBI	histidine	+	carbon source
29288	21217 ChEBI	L-alaninamide	+	carbon source
29288	18403 ChEBI	L-arabitol	+	carbon source
29288	24996 ChEBI	lactate	+	carbon source
29288	17716 ChEBI	lactose	+	carbon source
29288	15792 ChEBI	malonate	+	carbon source
29288	17306 ChEBI	maltose	+	carbon source
29288	29864 ChEBI	mannitol	+	carbon source
29288	37684 ChEBI	mannose	+	carbon source
29288	28053 ChEBI	melibiose	+	carbon source
29288	37657 ChEBI	methyl D-glucoside	+	carbon source
29288	51850 ChEBI	methyl pyruvate	+	carbon source
29288	17268 ChEBI	myo-inositol	+	carbon source
29288	506227 ChEBI	N-acetylglucosamine	+	carbon source
29288	18257 ChEBI	ornithine	+	carbon source
29288	26271 ChEBI	proline	+	carbon source
29288	17272 ChEBI	propionate	+	carbon source
29288	16634 ChEBI	raffinose	+	carbon source
29288	26546 ChEBI	rhamnose	+	carbon source
29288	15963 ChEBI	ribitol	+	carbon source
29288	33942 ChEBI	ribose	+	carbon source
29288	17822 ChEBI	serine	+	carbon source
29288	30911 ChEBI	sorbitol	+	carbon source
29288	30031 ChEBI	succinate	+	carbon source
29288	17992 ChEBI	sucrose	+	carbon source
29288	26986 ChEBI	threonine	+	carbon source
29288	27082 ChEBI	trehalose	+	carbon source
29288	53424 ChEBI	tween 20	+	carbon source
29288	53423 ChEBI	tween 40	+	carbon source
29288	53426 ChEBI	tween 80	+	carbon source
29288	16704 ChEBI	uridine	+	carbon source
29288	27248 ChEBI	urocanic acid	+	carbon source
29288	17151 ChEBI	xylitol	+	carbon source
29288	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29288	acid phosphatase	+	3.1.3.2
29288	alkaline phosphatase	+	3.1.3.1
29288	catalase	+	1.11.1.6
29288	urease	+	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	glycine betaine biosynthesis	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	threonine metabolism	100	10 of 10
66794	biotin biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	kanosamine biosynthesis II	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	cyanate degradation	100	3 of 3
66794	ribulose monophosphate pathway	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	adipate degradation	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	methylglyoxal degradation	100	5 of 5
66794	taurine degradation	100	1 of 1
66794	Entner Doudoroff pathway	100	10 of 10
66794	palmitate biosynthesis	100	22 of 22
66794	ubiquinone biosynthesis	100	7 of 7
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	photosynthesis	92.86	13 of 14
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	allantoin degradation	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	degradation of sugar acids	84	21 of 25
66794	arginine metabolism	83.33	20 of 24
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	proline metabolism	81.82	9 of 11
66794	vitamin B6 metabolism	81.82	9 of 11
66794	myo-inositol biosynthesis	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	vitamin B12 metabolism	79.41	27 of 34
66794	purine metabolism	78.72	74 of 94
66794	heme metabolism	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	pyrimidine metabolism	75.56	34 of 45
66794	CMP-KDO biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	degradation of sugar alcohols	75	12 of 16
66794	acetate fermentation	75	3 of 4
66794	lipid metabolism	74.19	23 of 31
66794	flavin biosynthesis	73.33	11 of 15
66794	pentose phosphate pathway	72.73	8 of 11
66794	glutathione metabolism	71.43	10 of 14
66794	citric acid cycle	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	urea cycle	69.23	9 of 13
66794	lysine metabolism	69.05	29 of 42
66794	histidine metabolism	68.97	20 of 29
66794	oxidative phosphorylation	67.03	61 of 91
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	d-mannose degradation	66.67	6 of 9
66794	non-pathway related	63.16	24 of 38
66794	carnitine metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	alanine metabolism	62.07	18 of 29
66794	phosphatidylethanolamine bioynthesis	61.54	8 of 13
66794	sulfate reduction	61.54	8 of 13
66794	methionine metabolism	61.54	16 of 26
66794	tryptophan metabolism	60.53	23 of 38
66794	D-cycloserine biosynthesis	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	degradation of pentoses	57.14	16 of 28
66794	propanol degradation	57.14	4 of 7
66794	polyamine pathway	56.52	13 of 23
66794	cysteine metabolism	55.56	10 of 18
66794	ascorbate metabolism	54.55	12 of 22
66794	coenzyme M biosynthesis	50	5 of 10
66794	lactate fermentation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	degradation of hexoses	50	9 of 18
66794	ethanol fermentation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	alginate biosynthesis	50	2 of 4
66794	vitamin E metabolism	50	2 of 4
66794	nitrate assimilation	44.44	4 of 9
66794	arachidonic acid metabolism	44.44	8 of 18
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	aclacinomycin biosynthesis	42.86	3 of 7
66794	creatinine degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	factor 420 biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	d-xylose degradation	36.36	4 of 11
66794	metabolism of disaccharids	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	sulfoquinovose degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	starch degradation	30	3 of 10
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	phenol degradation	30	6 of 20
66794	cholesterol biosynthesis	27.27	3 of 11
66794	glycogen biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7975	salt lake	Xinjiang Uygur Autonomous Region, Turpan Basin, Aiding Lake	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence FJ418176 (>99% sequence identity) for Aidingimonas halophila from Microbeatlas

Aquatic Samples	7
Soil Samples	1
Animal Samples	4
Plant Samples
Total Samples	12

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7975	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2693429859 annotated assembly for Aidingimonas halophila DSM 19219	scaffold	GCA_900106955	574349.3	2693429859	574349	75.05
124043	ASM4264700v1 assembly for Aidingimonas halophila KCTC 12885	scaffold	GCA_042647005			574349	73.76
66792	ASM1465165v1 assembly for Aidingimonas halophila KCTC 12885	scaffold	GCA_014651655	574349.7	8062755811	574349	69.96

Genome browser: GCA_900106955

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
7975	Modicisalibacter sp. YIM 90637 16S ribosomal RNA gene, partial sequence	FJ418176	1469	574349
124043	Aidingimonas halophila strain KCTC 12885 16S ribosomal RNA gene, partial sequence.	MT759846	1380	574349
124043	Aidingimonas halophila strain KCTC 12885 16S ribosomal RNA gene, partial sequence.	MT758071	1380	574349

GC content

@ref	GC-content (mol%)	Method
7975	57.5	high performance liquid chromatography (HPLC)
29288	57-58

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aidingimonas halophila DSM 19219
NCBI: GCA_900106955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.90	no
125439	motility	BacteriaNetⓘ	yes	87.80	no
125439	gram_stain	BacteriaNetⓘ	negative	98.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	79.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aidingimonas halophila DSM 19219
NCBI: GCA_900106955.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	97.16	yes
125438	aerobic	aerobicⓘ	yes	76.96	yes
125438	spore-forming	spore-formingⓘ	no	89.70	yes
125438	thermophilic	thermophileⓘ	no	97.48	yes
125438	flagellated	motile2+ⓘ	yes	81.88	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Isolation and diversity of sediment bacteria in the hypersaline aiding lake, China.	Guan TW, Lin YJ, Ou MY, Chen KB.	PLoS One	10.1371/journal.pone.0236006	2020
Phylogeny	Aidingimonas halophila gen. nov., sp. nov., a moderately halophilic bacterium isolated from a salt lake.	Wang Y, Tang SK, Lou K, Lee JC, Jeon CO, Xu LH, Kim CJ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.010264-0	2009

References

#7975	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19219
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29288	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25704 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aidingimonas halophila (DSM 19219, CCTCC AB 207002, KCTC 12885)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900106955

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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