Name: Halomonas cerina SP4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6067

Type strain:

Species: Halomonas cerina

Strain Designation: SP4

Culture col. no.: DSM 23438, CECT 7282, LMG 24145

Strain history: <- CECT <- C.M. González-Domenech <- M. J. Martínez-Cánovas; SP4

NCBI tax ID(s): 447424 (species)

SI-ID 308713

LMG 24145, CECT 7282, DSM 23438

Special Collections

Section

Halomonas cerina SP4 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Saline soil.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas cerina**
	Full Scientific Name (LPSN)	Halomonas cerina González-Domenech et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32327]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.5

[Ref.: #32327]	Cell length	2.35 µm

[Ref.: #32327]	Cell width	0.8 µm

[Ref.: #32327]	Cell shape	rod-shaped

[Ref.: #32327]	Motility	no

[Ref.: #32327]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17210]

Culture medium

MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)

[Ref.: #17210]

Culture medium growth

[Ref.: #17210]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17210]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17210]	growth	28 °C
[Ref.: #32327]	growth	04-45 °C
[Ref.: #32327]	optimum	26 °C

	pH	Kind of pH		pH
[Ref.: #32327]			optimum	8.5
[Ref.: #32327]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32327]

Oxygen tolerance

aerobe

[Ref.: #32327]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32327]		NaCl		growth	03-25	%
[Ref.: #32327]		NaCl		optimum	7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32327]	acetate ChEBI	+	carbon source
[Ref.: #32327]	citrate ChEBI	+	carbon source
[Ref.: #32327]	gluconate ChEBI	+	carbon source
[Ref.: #32327]	glucose ChEBI	+	carbon source
[Ref.: #32327]	maltose ChEBI	+	carbon source
[Ref.: #32327]	mannose ChEBI	+	carbon source
[Ref.: #32327]	nitrate ChEBI	+	reduction
[Ref.: #32327]	succinate ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32327]	catalase	+	1.11.1.6
[Ref.: #32327]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32327]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17210]	Sample type/isolated from	Saline soil
[Ref.: #17210]	Geographic location (country and/or sea, region)	Santa Pola, Alicante
[Ref.: #17210]	Country	Spain
[Ref.: #17210]	Country ISO 3 Code	ESP
[Ref.: #17210]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17210]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17210]	Halomonas cerina strain SP4 16S ribosomal RNA gene, partial sequence	EF613112	1449	GenBank ENA	447424 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas cerina CECT 7282	GCA_014192215	scaffold	GenBank ENA	447424 tax ID	*
[Ref.: #66792]	Halomonas cerina strain CECT 7282	447424.3	wgs	PATRIC	447424 tax ID	*
[Ref.: #66792]	Halomonas cerina CECT 7282	2824403443	draft	JGI IMG/M	447424 tax ID	*

[Ref.: #32327]

GC-content

66.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas cerina CECT 7282 NCBI: GCA_014192215.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.555	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	77.197	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.998	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	66.554	yes

Availability in culture collections External links

[Ref.: #17210]

Culture collection no.

DSM 23438, CECT 7282, LMG 24145

[Ref.: #75554]

SI-ID 308713

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas ramblicola sp. nov., a moderately halophilic bacterium from Rambla Salada, a Mediterranean hypersaline rambla.	Luque R, Bejar V, Quesada E, Martinez-Checa F, Llamas I	Int J Syst Evol Microbiol	10.1099/ijs.0.039453-0	2012	*
Phylogeny	Halomonas cerina sp. nov., a moderately halophilic, denitrifying, exopolysaccharide-producing bacterium.	Gonzalez-Domenech CM, Martinez-Checa F, Quesada E, Bejar V	Int J Syst Evol Microbiol	10.1099/ijs.0.65322-0	2008	*

References

#17210

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23438

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32327

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28561 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75554

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID308713.1 )

#28561

IJSEM 803 2008 ( DOI 10.1099/ijs.0.65322-0 , PubMed 18398173 )

* These data were automatically processed and therefore are not curated

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Halomonas cerina CECT 7282

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