Name: Halomonas organivorans G-16.1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6044

Type strain:

Species: Halomonas organivorans

Strain Designation: G-16.1

Culture col. no.: DSM 16226, CCM 7142, CECT 5995, CIP 108269

Strain history: CIP <- 2004, A. Ventosa, Sevilla, Spain: strain G-16.1

NCBI tax ID(s): 257772 (species)

SI-ID 134288

CCM 7142, CECT 5995, CIP 108574, DSM 16226, CIP 108269

Section

Halomonas organivorans G-16.1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from saline soils.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas organivorans**
	Full Scientific Name (LPSN)	Halomonas organivorans García et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #31242]	Gram stain	negative
[Ref.: #121433]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.961

[Ref.: #31242]	Cell length	2.5 µm

[Ref.: #31242]	Cell width	1.1 µm

[Ref.: #31242]	Cell shape	rod-shaped
[Ref.: #121433]	Cell shape	rod-shaped

[Ref.: #31242]	Motility	yes
[Ref.: #121433]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.929

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6341]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6341]

Culture medium growth

[Ref.: #6341]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6341]

Culture medium composition

expand / minimize

[Ref.: #33934]

Culture medium

Marine agar (MA)

[Ref.: #33934]

Culture medium growth

[Ref.: #33934]

Culture medium composition

expand / minimize

[Ref.: #121433]

Culture medium

CIP Medium 13

[Ref.: #121433]

Culture medium growth

[Ref.: #121433]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6341]		growth	37 °C
[Ref.: #31242]		growth	15-45 °C
[Ref.: #31242]		optimum	37 °C
[Ref.: #33934]		growth	30 °C
[Ref.: #121433]		growth	15-41 °C
[Ref.: #121433]	no	growth	5 °C
[Ref.: #121433]	no	growth	45 °C

[Ref.: #6341]	Temperature range	mesophilic
[Ref.: #31242]	Temperature range	mesophilic
[Ref.: #33934]	Temperature range	mesophilic
[Ref.: #121433]	Temperature range	psychrophilic
[Ref.: #121433]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #31242]			optimum	7
[Ref.: #31242]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31242]	Oxygen tolerance	aerobe
[Ref.: #121433]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.899

	Salt	Tested relation		Salt conc.
[Ref.: #31242]	NaCl		growth	1.5-30	%
[Ref.: #31242]	NaCl		optimum	8.75	%
[Ref.: #121433]	NaCl		growth	10	%
[Ref.: #121433]	NaCl	no	growth	0	%
[Ref.: #121433]	NaCl	no	growth	2	%
[Ref.: #121433]	NaCl	no	growth	4	%
[Ref.: #121433]	NaCl	no	growth	6	%
[Ref.: #121433]	NaCl	no	growth	8	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31242]	alanine ChEBI	+	carbon source
[Ref.: #31242]	asparagine ChEBI	+	carbon source
[Ref.: #31242]	aspartate ChEBI	+	carbon source
[Ref.: #121433]	citrate ChEBI	-	carbon source
[Ref.: #31242]	esculin ChEBI	+	hydrolysis
[Ref.: #121433]	esculin ChEBI	-	hydrolysis
[Ref.: #31242]	ethanolamine ChEBI	+	carbon source
[Ref.: #31242]	fructose ChEBI	+	carbon source
[Ref.: #31242]	galactose ChEBI	+	carbon source
[Ref.: #31242]	glucose ChEBI	+	carbon source
[Ref.: #31242]	glutamate ChEBI	+	carbon source
[Ref.: #31242]	glycerol ChEBI	+	carbon source
[Ref.: #31242]	glycogen ChEBI	+	carbon source
[Ref.: #121433]	hippurate ChEBI	+	hydrolysis
[Ref.: #31242]	histidine ChEBI	+	carbon source
[Ref.: #31242]	inosine ChEBI	+	carbon source
[Ref.: #31242]	L-arabitol ChEBI	+	carbon source
[Ref.: #31242]	leucine ChEBI	+	carbon source
[Ref.: #121433]	malonate ChEBI	-	assimilation
[Ref.: #31242]	mannitol ChEBI	+	carbon source
[Ref.: #31242]	mannose ChEBI	+	carbon source
[Ref.: #31242]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #31242]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #121433]	nitrate ChEBI	+	reduction
[Ref.: #121433]	nitrate ChEBI	+	respiration
[Ref.: #121433]	nitrite ChEBI	-	reduction
[Ref.: #31242]	proline ChEBI	+	carbon source
[Ref.: #31242]	putrescine ChEBI	+	carbon source
[Ref.: #31242]	rhamnose ChEBI	+	carbon source
[Ref.: #31242]	serine ChEBI	+	carbon source
[Ref.: #31242]	sorbitol ChEBI	+	carbon source
[Ref.: #31242]	succinate ChEBI	+	carbon source
[Ref.: #31242]	sucrose ChEBI	+	carbon source
[Ref.: #31242]	threonine ChEBI	+	carbon source
[Ref.: #31242]	trehalose ChEBI	+	carbon source
[Ref.: #31242]	tween 40 ChEBI	+	carbon source
[Ref.: #31242]	tween 80 ChEBI	+	carbon source
[Ref.: #31242]	uridine ChEBI	+	carbon source
[Ref.: #31242]	urocanic acid ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #31242]		hydrogen sulfide ChEBI	yes
[Ref.: #121433]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121433]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121433]	amylase	-
[Ref.: #121433]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121433]	caseinase	-	3.4.21.50
[Ref.: #31242]	catalase	+	1.11.1.6
[Ref.: #121433]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #121433]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #121433]	gelatinase	-
[Ref.: #121433]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #121433]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121433]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121433]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121433]	oxidase	+
[Ref.: #121433]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #121433]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121433]	tryptophan deaminase	-
[Ref.: #121433]	tween esterase	+
[Ref.: #121433]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121433]	2681	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	-	-	-	-	-	-	-	+	-	+	-	+	+	-	-	+	-	-	-	-	-	+	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	+	+	-	-	-	-	+	+	+	-	-	+	-	-	+	+	-	-	-	-	-	+	-	-	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	+	+	+	-	-	-	+	+	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121433]	11042	-	+	+	-	-	+	+	+	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6341]	Sample type/isolated from	saline soils
[Ref.: #6341]	Geographic location (country and/or sea, region)	Huelva, Isla Cristina
[Ref.: #6341]	Country	Spain
[Ref.: #6341]	Country ISO 3 Code	ESP
[Ref.: #6341]	Continent	Europe

[Ref.: #121433]	Sample type/isolated from	Environment, Saline soil in Isla Cristina
[Ref.: #121433]	Country	Spain
[Ref.: #121433]	Country ISO 3 Code	ESP
[Ref.: #121433]	Continent	Europe
[Ref.: #121433]	Isolation date	2003
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ616910 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	34
Soil Samples	7
Animal Samples	5
Plant Samples	1
Total Samples	47

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6341]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121433]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6341]	Halomonas organivorans partial 16S rRNA gene, type strain G-16.1T	AJ616910	1472	ENA	257772 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas organivorans CECT 5995	GCA_014192055	scaffold	GenBank	257772 tax ID	*
[Ref.: #66792]	Halomonas organivorans strain CECT 5995	257772.3	wgs	PATRIC	257772 tax ID	*
[Ref.: #66792]	Halomonas organivorans CECT 5995	2824377609	draft	JGI IMG/M	257772 tax ID	*

[Ref.: #6341]	GC-content	61.0 mol%
[Ref.: #31242]	GC-content	61.95 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halomonas organivorans CECT 5995 NCBI: GCA_014192055.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas organivorans CECT 5995 NCBI: GCA_014192055.1
[Ref.: #69480]	flagellated	yes	69.152	no
[Ref.: #69480]	gram-positive	no	98.406	yes
[Ref.: #69480]	anaerobic	no	98.443	yes
[Ref.: #69480]	aerobic	yes	86.648	no
[Ref.: #69480]	halophile	yes	91.158	yes
[Ref.: #69480]	spore-forming	no	95.421	no
[Ref.: #69480]	glucose-util	yes	95.314	yes
[Ref.: #69480]	thermophile	no	99.216	yes
[Ref.: #69480]	motile	yes	91.601	yes
[Ref.: #69480]	glucose-ferment	no	66.284	no

Availability in culture collections External links

[Ref.: #6341]

Culture collection no.

DSM 16226, CCM 7142, CECT 5995, CIP 108269

[Ref.: #75531]

SI-ID 134288

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas smyrnensis sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium.	Poli A, Nicolaus B, Denizci AA, Yavuzturk B, Kazan D	Int J Syst Evol Microbiol	10.1099/ijs.0.037036-0	2012	*
Metabolism	Cloning, characterization and analysis of cat and ben genes from the phenol degrading halophilic bacterium Halomonas organivorans.	de Lourdes Moreno M, Sanchez-Porro C, Piubeli F, Frias L, Garcia MT, Mellado E	PLoS One	10.1371/journal.pone.0021049	2011	*
Phylogeny	Halomonas organivorans sp. nov., a moderate halophile able to degrade aromatic compounds.	Garcia MT, Mellado E, Ostos JC, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.63114-0	2004	*

References

#6341

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16226

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31242

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27566 (see below)

#33934 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75531

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134288.1 )

#121433 Collection of Institut Pasteur ; Curators of the CIP; CIP 108269

#27566

IJSEM 1723 2004 ( DOI 10.1099/ijs.0.63114-0 , PubMed 15388735 )

* These data were automatically processed and therefore are not curated

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Halomonas organivorans CECT 5995

Halomonas organivorans CECT 5995

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