Name: Halomonas alimentaria YKJ-16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6034

Type strain:

Species: Halomonas alimentaria

Strain Designation: YKJ-16

Culture col. no.: DSM 15356, JCM 10888, KCCM 41042, KCTC 12950, CGMCC 1.3500, CIP 107381

Strain history: <- JCM <- Y-H Park YKJ-16

NCBI tax ID(s): 147248 (species)

Section

Halomonas alimentaria YKJ-16 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seafood jeotgal.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas alimentaria**
	Full Scientific Name (PNU)	Halomonas alimentaria Yoon et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5871]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5871]

Culture medium growth

[Ref.: #5871]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #5871]

Culture medium composition

expand / minimize

[Ref.: #33783]

Culture medium

Marine agar (MA)

[Ref.: #33783]

Culture medium growth

[Ref.: #33783]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5871]	growth	30 °C
[Ref.: #33783]	growth	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #5871]	Temperature range	mesophilic
[Ref.: #33783]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.988

[Ref.: #67770]	Observation	quinones: Q-9
[Ref.: #67771]	Observation	quinones: Q-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5871]	Sample type/isolated from	seafood jeotgal
[Ref.: #5871]	Geographic location (country and/or sea, region)	Korea
[Ref.: #5871]	Country	Republic of Korea
[Ref.: #5871]	Country ISO 3 Code	KOR
[Ref.: #5871]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Jeotgal, Korean traditional fermented seafood
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From jeotgal (Korean traditional fermented seafood)
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF211860 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	297
Soil Samples	49
Animal Samples	54
Plant Samples	6
Total Samples	406

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5871]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5871]	Halomonas alimentaria 16S ribosomal RNA gene, partial sequence	AF211860	1493	ENA	147248 tax ID
[Ref.: #20218]	Halomonas alimentaria genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 1256	AB367227	1256	ENA	147248 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas alimentaria DSM 15356	GCA_009902005	scaffold	GenBank	147248 tax ID	*
[Ref.: #66792]	Halomonas alimentaria strain DSM 15356	147248.4	wgs	PATRIC	147248 tax ID	*

[Ref.: #5871]	GC-content	63 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	63.0 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas alimentaria DSM 15356 NCBI: GCA_009902005.1
[Ref.: #69480]	gram-positive	no	99.996	no
[Ref.: #69480]	anaerobic	no	92.834	no
[Ref.: #69480]	spore-forming	no	99.988	yes
[Ref.: #69480]	thermophile	no	98.077	yes
[Ref.: #69480]	motile	yes	63.312	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halomonas alimentaria DSM 15356 NCBI: GCA_009902005.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #5871]

Culture collection no.

DSM 15356, JCM 10888, KCCM 41042, KCTC 12950, CGMCC 1.3500, CIP 107381

[Ref.: #20218]

Associated Passport(s) in StrainInfo

302626, 302623, 302624, 320026

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas icarae sp. nov., a moderately halophilic bacterium isolated from beach soil in India.	Pandiyan K, Kushwaha P, Bagul SY, Chakdar H, Madhaiyan M, Krishnamurthi S, Kumar P, Karthikeyan N, Singh A, Kumar M, Singh UB, Saxena AK	Int J Syst Evol Microbiol	10.1099/ijsem.0.004611	2020	*
Phylogeny	Halomonas marinisediminis sp. nov., A Moderately Halophilic Bacterium Isolated from the Bohai Gulf.	Zhao H, Wang C, Tian Y, Zhang Y, Wu Y, Zhang Y, Du Z, Li B, Ji X	Curr Microbiol	10.1007/s00284-020-02147-4	2020	*
Phylogeny	Halomonas alkalicola sp. nov., isolated from a household product plant.	Tang X, Zhai L, Lin Y, Yao S, Wang L, Ge Y, Liu Y, Zhang X, Zhang T, Zhang L, Liu J, Cheng C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001757	2017	*
Phylogeny	Halomonas sediminicola sp. nov., a moderately halophilic bacterium isolated from a solar saltern sediment.	Lee JC, Kim SJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001278	2016	*
Phylogeny	Halomonas korlensis sp. nov., a moderately halophilic, denitrifying bacterium isolated from saline and alkaline soil.	Li HB, Zhang LP, Chen SF	Int J Syst Evol Microbiol	10.1099/ijs.0.65711-0	2008	*
Phylogeny	Halomonas nitroreducens sp. nov., a novel nitrate- and nitrite-reducing species.	Gonzalez-Domenech CM, Bejar V, Martinez-Checa F, Quesada E	Int J Syst Evol Microbiol	10.1099/ijs.0.65415-0	2008	*
Phylogeny	Halomonas shengliensis sp. nov., a moderately halophilic, denitrifying, crude-oil-utilizing bacterium.	Wang YN, Cai H, Chi CQ, Lu AH, Lin XG, Jiang ZF, Wu XL	Int J Syst Evol Microbiol	10.1099/ijs.0.64973-0	2007	*
Phylogeny	Halomonas alimentaria sp. nov., isolated from jeotgal, a traditional Korean fermented seafood.	Yoon JH, Lee KC, Kho YH, Kang KH, Kim CJ, Park YH	Int J Syst Evol Microbiol	10.1099/00207713-52-1-123	2002	*

References

#5871

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15356

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33783 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Halomonas alimentaria DSM 15356

Halomonas alimentaria DSM 15356

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