Name: Halomonas aquamarina 558
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6010

Type strain:

Species: Halomonas aquamarina

Strain Designation: 558

Culture col. no.: DSM 30161, ATCC 14400, KCTC 22193, NCMB 557, CCUG 16157, LMG 3416, LMG 2853, IAM 12550, ZoBell and Upham 558, BCRC 12878, CECT 5000, CGMCC 1.2324, CIP 105454, LMD 73.17, NCIB 557, NCIMB 557, Zobell 558, ZoBell and Upham 558T, Zobell & Upham 55

Strain history: CIP <- 1998, NCIMB <- C.E. Zobell: strain 558

NCBI tax ID(s): 77097 (species)

SI-ID 92115

LMG 2853, ATCC 14400, LMG 3416, NCMB 557, NCIMB 557, IAM 12550, CCUG 16157, CIP 105454, LMD 73.17, CECT 5000, NCIB 557, BCRC 12878, CCRC 12878, CGMCC 1.2324, DSM 30161, VTT E-103156, KCTC 22193

Special Collections

Other strains from Halomonas aquamarina

Section

Halomonas aquamarina 558 is an aerobe, Gram-negative animal pathogen that was isolated from Seawater.

Gram-negative
aerobe
animal pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas aquamarina**
	Full Scientific Name (LPSN)	Halomonas aquamarina (ZoBell and Upham 1944) Dobson and Franzmann 1996

	Synonym	"Vreelandella* aquamarina"*
	Synonym	Alcaligenes aquamarinus
	Synonym	"Achromobacter* aquamarinus"*
	Synonym	Alcaligenes aestus
	Synonym	Alcaligenes faecalis subsp. homari
	Synonym	Deleya aesta
	Synonym	Deleya aquamarina

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #116427]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.5

[Ref.: #116427]	Cell shape	rod-shaped

[Ref.: #116427]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #40144]

Culture medium

Marine agar (MA)

[Ref.: #40144]

Culture medium growth

[Ref.: #40144]

Culture medium composition

expand / minimize

[Ref.: #9171]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #9171]

Culture medium growth

[Ref.: #9171]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9171]

Culture medium composition

expand / minimize

[Ref.: #116427]

Culture medium

CIP Medium 13

[Ref.: #116427]

Culture medium growth

[Ref.: #116427]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #9171]		growth	25 °C
[Ref.: #40144]		growth	25 °C
[Ref.: #46452]		growth	20 °C
[Ref.: #67771]		growth	26 °C
[Ref.: #116427]		growth	5-30 °C
[Ref.: #116427]	no	growth	37 °C
[Ref.: #116427]	no	growth	41 °C
[Ref.: #116427]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.471
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #116427]	NaCl		growth	6-10	%
[Ref.: #116427]	NaCl	no	growth	0	%
[Ref.: #116427]	NaCl	no	growth	2	%
[Ref.: #116427]	NaCl	no	growth	4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116427]	esculin ChEBI	-	hydrolysis
[Ref.: #116427]	hippurate ChEBI	-	hydrolysis
[Ref.: #116427]	nitrate ChEBI	-	builds gas from
[Ref.: #116427]	nitrate ChEBI	+	reduction
[Ref.: #116427]	nitrite ChEBI	-	builds gas from
[Ref.: #116427]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #116427]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #116427]		acetoin ChEBI	-
[Ref.: #116427]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116427]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116427]	amylase	-
[Ref.: #116427]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116427]	caseinase	-	3.4.21.50
[Ref.: #116427]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116427]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #116427]	gelatinase	+/-
[Ref.: #116427]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116427]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116427]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116427]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116427]	oxidase	+
[Ref.: #116427]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116427]	tryptophan deaminase	-
[Ref.: #116427]	tween esterase	-
[Ref.: #116427]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116427]	1159	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116427]	8712	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #46452]	Sample type/isolated from	Seawater

[Ref.: #116427]	Sample type/isolated from	Environment, Sea water
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ306888 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	5177
Soil Samples	435
Animal Samples	4415
Plant Samples	138
Total Samples	10165

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9171]	Pathogenicity (animal)	yes
[Ref.: #9171]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116427]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Deleya aquamarina (ATCC 14400) 16S ribosomal RNA (16S rRNA) gene	M93352	1466	GenBank ENA	77097 tax ID	*
[Ref.: #20218]	Halomonas aquamarina partial 16S rRNA gene, strain DSM 30161	AJ306888	1528	GenBank ENA	77097 tax ID	*
[Ref.: #20218]	Halomonas aquamarina genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 920	AB367209	920	GenBank ENA	77097 tax ID	*
[Ref.: #20218]	Halomonas aquamarina genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 1204	AB367210	1204	GenBank ENA	77097 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas aquamarina 558	GCA_900110265	scaffold	GenBank ENA	77097 tax ID	*
[Ref.: #66792]	Halomonas aquamarina 558	2639762508	draft	JGI IMG/M	77097 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halomonas aquamarina 558 NCBI: GCA_900110265.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas aquamarina 558 NCBI: GCA_900110265.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.5	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.952	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.391	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.471	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.25	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	80.981	no

Availability in culture collections External links

[Ref.: #9171]

Culture collection no.

DSM 30161, ATCC 14400, KCTC 22193, NCMB 557, CCUG 16157, LMG 3416, LMG 2853, IAM 12550, ZoBell and Upham 558, BCRC 12878, CECT 5000, CGMCC 1.2324, CIP 105454, LMD 73.17, NCIB 557, NCIMB 557, Zobell 558, ZoBell and Upham 558T, Zobell & Upham 55

[Ref.: #75497]

SI-ID 92115

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas piezotolerans sp. nov., a multiple-stress-tolerant bacterium isolated from a deep-sea sediment sample of the New Britain Trench.	Yan F, Fang J, Cao J, Wei Y, Liu R, Wang L, Xie Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.004069	2020	*
Metabolism	Sphaerocyclamide, a prenylated cyanobactin from the cyanobacterium Sphaerospermopsis sp. LEGE 00249.	Martins J, Leikoski N, Wahlsten M, Azevedo J, Antunes J, Jokela J, Sivonen K, Vasconcelos V, Fewer DP, Leao PN	Sci Rep	10.1038/s41598-018-32618-5	2018	*
Phylogeny	Halomonas songnenensis sp. nov., a moderately halophilic bacterium isolated from saline and alkaline soils.	Jiang J, Pan Y, Hu S, Zhang X, Hu B, Huang H, Hong S, Meng J, Li C, Wang K	Int J Syst Evol Microbiol	10.1099/ijs.0.056499-0	2014	*
Phylogeny	Halomonas andesensis sp. nov., a moderate halophile isolated from the saline lake Laguna Colorada in Bolivia.	Guzman D, Quillaguaman J, Munoz M, Hatti-Kaul R	Int J Syst Evol Microbiol	10.1099/ijs.0.014522-0	2009	*

References

#9171

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30161

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40144 ; Curators of the CIP;
#46452 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 16157

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75497

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92115.1 )

#116427 Collection of Institut Pasteur ; Curators of the CIP; CIP 105454
* These data were automatically processed and therefore are not curated

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