Geodermatophilus telluris CF9/1/1 | Type strain | DSM 45421, CCUG 62764, MTCC 11415 | BacDiveID:5822

Strain identifier

BacDive ID: 5822

Type strain:

Species: Geodermatophilus telluris

Strain Designation: CF9/1/1

Culture col. no.: DSM 45421, CCUG 62764, MTCC 11415

Strain history: <- A. Gorbushina, Bundesanstalt für Materialforschung und -prüfung, Berlin; CF9/1/1

NCBI tax ID(s): 1190417 (species)

SI-ID 403329

DSM 45421, CCUG 62764

Section

Geodermatophilus telluris CF9/1/1 is an aerobe, spore-forming, mesophilic bacterium that was isolated from arid desert sand.

Gram-positive
motile
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Geodermatophilales*
	Family	*Geodermatophilaceae*
	Genus	*Geodermatophilus*
	Species	**Geodermatophilus telluris**
	Full Scientific Name (LPSN)	Geodermatophilus telluris Montero-Calasanz et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30889]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30889]	Motility	yes

[Ref.: #69393]	Colony color	Jet black (9005), green brown (8000)
[Ref.: #69393]	Cultivation medium used	ISP 7

[Ref.: #69393]	Colony color	Jet black (9005), olive grey (7002)
[Ref.: #69393]	Cultivation medium used	ISP 4

[Ref.: #69393]	Colony color	Jet black (9005), yellow olive (6014)
[Ref.: #69393]	Cultivation medium used	ISP 2

[Ref.: #69393]	Colony color	Jet black (9005), yellow olive (6014)
[Ref.: #69393]	Cultivation medium used	ISP 3

[Ref.: #69393]	Colony color	Khaki grey (7008)
[Ref.: #69393]	Cultivation medium used	suter with tyrosine

[Ref.: #69393]	Colony color	Olive grey (7002), yellow olive (6014)
[Ref.: #69393]	Cultivation medium used	ISP 5

[Ref.: #69393]	Colony color	Yellow olive (6014)
[Ref.: #69393]	Cultivation medium used	ISP 6

[Ref.: #69393]	Colony color	Yellow olive (6014), grey olive (6006)
[Ref.: #69393]	Cultivation medium used	suter without tyrosine

[Ref.: #62897]	Incubation period	3-4 days

[Ref.: #30889]	Pigment production	no
[Ref.: #69393]	Pigment production	no
[Ref.: #69393]	Pigment name	Melanin
[Ref.: #69393]	Pigment production	no
[Ref.: #69393]	Pigment name	soluble pigment

[Ref.: #69393]	Multicellular complex forming ability	no
[Ref.: #69393]	Multicellular complex name	Aerial mycelium
[Ref.: #69393]	Medium Name (multicellularity)	ISP 2

[Ref.: #69393]	Multicellular complex forming ability	no
[Ref.: #69393]	Multicellular complex name	Aerial mycelium
[Ref.: #69393]	Medium Name (multicellularity)	ISP 3

[Ref.: #69393]	Multicellular complex forming ability	no
[Ref.: #69393]	Multicellular complex name	Aerial mycelium
[Ref.: #69393]	Medium Name (multicellularity)	ISP 4

[Ref.: #69393]	Multicellular complex forming ability	no
[Ref.: #69393]	Multicellular complex name	Aerial mycelium
[Ref.: #69393]	Medium Name (multicellularity)	ISP 5

[Ref.: #69393]	Multicellular complex forming ability	no
[Ref.: #69393]	Multicellular complex name	Aerial mycelium
[Ref.: #69393]	Medium Name (multicellularity)	ISP 6

[Ref.: #69393]	Multicellular complex forming ability	no
[Ref.: #69393]	Multicellular complex name	Aerial mycelium
[Ref.: #69393]	Medium Name (multicellularity)	ISP 7

[Ref.: #69393]	Multicellular complex forming ability	no
[Ref.: #69393]	Multicellular complex name	Aerial mycelium
[Ref.: #69393]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69393]	Multicellular complex forming ability	no
[Ref.: #69393]	Multicellular complex name	Aerial mycelium
[Ref.: #69393]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17318]			growth	28 °C
[Ref.: #30889]			growth	15-40 °C
[Ref.: #62897]			growth	30-37 °C

[Ref.: #17318]	Temperature range	mesophilic
[Ref.: #62897]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30889]			growth	6-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30889]	Oxygen tolerance	aerobe
[Ref.: #62897]	Oxygen tolerance	aerobe

[Ref.: #30889]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %94.471

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30889]		NaCl		growth	0-4	%
[Ref.: #69393]		NaCl		growth	0-10	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30889]		acetate ChEBI	+	carbon source
[Ref.: #69393]		arabinose ChEBI	+	growth
[Ref.: #30889]		arginine ChEBI	+	carbon source
[Ref.: #30889]		cellobiose ChEBI	+	carbon source
[Ref.: #69393]		cellulose ChEBI	+	growth
[Ref.: #68379]		D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]		D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]		D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]		D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30889]		dextrin ChEBI	+	carbon source
[Ref.: #30889]		esculin ChEBI	+	hydrolysis
[Ref.: #68379]		esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69393]		fructose ChEBI	+	growth
[Ref.: #68379]		gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #30889]		gluconate ChEBI	+	carbon source
[Ref.: #69393]		glucose ChEBI	+	growth
[Ref.: #30889]		glutamate ChEBI	+	carbon source
[Ref.: #30889]		glycerol ChEBI	+	carbon source
[Ref.: #68379]		glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69393]		inositol ChEBI	-	growth
[Ref.: #30889]		L-arabitol ChEBI	+	carbon source
[Ref.: #30889]		lactate ChEBI	+	carbon source
[Ref.: #68379]		lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30889]		malate ChEBI	+	carbon source
[Ref.: #30889]		maltose ChEBI	+	carbon source
[Ref.: #68379]		maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30889]		mannitol ChEBI	+	carbon source
[Ref.: #69393]		mannose ChEBI	+	growth
[Ref.: #30889]		methyl pyruvate ChEBI	+	carbon source
[Ref.: #68379]		nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #30889]		propionate ChEBI	+	carbon source
[Ref.: #30889]		quinate ChEBI	+	carbon source
[Ref.: #69393]		raffinose ChEBI	+	growth
[Ref.: #69393]		rhamnose ChEBI	+	growth
[Ref.: #30889]		salicin ChEBI	+	carbon source
[Ref.: #30889]		sorbitol ChEBI	+	carbon source
[Ref.: #30889]		succinate ChEBI	+	carbon source
[Ref.: #30889]		sucrose ChEBI	+	carbon source
[Ref.: #69393]		sucrose ChEBI	+	growth
[Ref.: #68379]		sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30889]		trehalose ChEBI	+	carbon source
[Ref.: #30889]		tween 40 ChEBI	+	carbon source
[Ref.: #68379]		urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69393]		xylose ChEBI	+	growth
		Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30889]		acid phosphatase	+	3.1.3.2
[Ref.: #68382]		acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #30889]		alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]		alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]		alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]		alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]		alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]		beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]		beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]		beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68382]		beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]		cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]		esterase (C 4)	+		* from API zym
[Ref.: #68382]		esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]		gelatinase	+		* from API Coryne
[Ref.: #68382]		leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]		N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]		naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]		pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]		pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]		trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]		urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]		valine arylamidase	+		* from API zym
		Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69393]	3886	-	+	-	+	-	-	+	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69393]	6070	not determinedn.d.	+	+	+	+/-	+	+	+	-	+	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17318]	Sample type/isolated from	arid desert sand
[Ref.: #17318]	Geographic location (country and/or sea, region)	Saharan desert, near Vers Ourba
[Ref.: #17318]	Country	Chad
[Ref.: #17318]	Country ISO 3 Code	TCD
[Ref.: #17318]	Continent	Africa

[Ref.: #62897]	Sample type/isolated from	Sand,desert
[Ref.: #62897]	Sampling date	2007
[Ref.: #62897]	Geographic location (country and/or sea, region)	near Ourba
[Ref.: #62897]	Country	Chad
[Ref.: #62897]	Country ISO 3 Code	TCD
[Ref.: #62897]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sandy
#Climate	#Hot	#Arid

What are isolation sources categories?

Global distribution of 16S sequence HE815469 (>99% sequence identity) for Geodermatophilus from Microbeatlas

Aquatic Samples	3
Soil Samples	84
Animal Samples	18
Plant Samples	2
Total Samples	107

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17318]	Geodermatophilus telluris partial 16S rRNA gene, culture collection DSM:45421, type strain CF 9/1/1T	HE815469	1528	ENA	1190417 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Geodermatophilus telluris DSM 45421	GCA_900102745	scaffold	GenBank	1190417 tax ID	*
[Ref.: #66792]	Geodermatophilus telluris strain DSM 45421	1190417.3	wgs	PATRIC	1190417 tax ID	*
[Ref.: #66792]	Geodermatophilus telluris DSM 45421	2602042050	draft	JGI IMG/M	1190417 tax ID	*

[Ref.: #17318]	GC-content	75.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30889]	GC-content	75.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Geodermatophilus telluris DSM 45421 NCBI: GCA_900102745.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Geodermatophilus telluris DSM 45421 NCBI: GCA_900102745.1
[Ref.: #69480]	motile	yes	77.36	yes
[Ref.: #69480]	flagellated	no	92.571	no
[Ref.: #69480]	gram-positive	yes	92.413	yes
[Ref.: #69480]	anaerobic	no	99.124	yes
[Ref.: #69480]	aerobic	yes	91.612	yes
[Ref.: #69480]	halophile	no	88.479	no
[Ref.: #69480]	spore-forming	no	69.472	no
[Ref.: #69480]	glucose-ferment	no	89.391	yes
[Ref.: #69480]	thermophile	no	97.437	no
[Ref.: #69480]	glucose-util	yes	88.525	yes

Availability in culture collections External links

Culture collection no.

DSM 45421, CCUG 62764, MTCC 11415

SI-ID 403329

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Geodermatophilus telluris sp. nov., an actinomycete isolated from Saharan desert sand.	Montero-Calasanz MDC, Goker M, Potter G, Rohde M, Sproer C, Schumann P, Klenk HP, Gorbushina AA	Int J Syst Evol Microbiol	10.1099/ijs.0.046888-0	2012	*

References

#17318

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45421

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30889

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27219 (see below)

#62897 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62764

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69393

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75304

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403329.1 )

#27219

IJSEM 2254 2013 ( DOI 10.1099/ijs.0.046888-0 , PubMed 23159748 )

* These data were automatically processed and therefore are not curated

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