Geodermatophilus arenarius CF5/4 | Type strain | DSM 45418, CCUG 62763, MTCC 11413, JCM 30063 | BacDiveID:5820

Strain identifier

BacDive ID: 5820

Type strain:

Species: Geodermatophilus arenarius

Strain Designation: CF5/4

Culture col. no.: DSM 45418, CCUG 62763, MTCC 11413, JCM 30063

Strain history: MTCC 11413 <-- A. A. Gorbushina CF5/4.

NCBI tax ID(s): 1137990 (species)

SI-ID 405995

DSM 45418, CCUG 62763

Section

Geodermatophilus arenarius CF5/4 is an aerobe, mesophilic bacterium that was isolated from desert sand.

aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Geodermatophilales*
	Family	*Geodermatophilaceae*
	Genus	*Geodermatophilus*
	Species	**Geodermatophilus arenarius**
	Full Scientific Name (LPSN)	Geodermatophilus arenarius Montero-Calasanz et al. 2013

Information on morphological and physiological properties Morphology

Incubation period

1-2 days

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

R2A MEDIUM (DSMZ Medium 830)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16550]			growth	28 °C
[Ref.: #62896]			growth	37 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #16550]	Temperature range	mesophilic
[Ref.: #62896]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

aerobe

Observation

quinones: MK-9(H₄)

Fatty acid profile

Metadata FA analysis

Reference

Fatty acid	Percentage	ECL
C15:0 ISO	27.1	14.621
C16:0 iso	26.6	15.626
C16:1 ISO H	10.7	15.461
C17:1 ω8c	7.5	16.792
C17:1 ω9c ISO	4.9	16.416
C17:0 iso	2.9	16.629
C16:1 ω7c	2.5	15.819
Unidentified	2.4	14.927
C15:0	2.3	15
C17:0 anteiso	2.3	16.722
C15:0 ANTEISO	1.7	14.711
C16:1 ω3c	1.7	15.933
C16:0	1.7	16
C13:0 3OH/C15:1 i I/H	1.4	14.469
C17:0	1.2	17
C14:0 ISO	1.2	13.618
C18:1 ω9c	1.1	17.769
C15:1 ω6c	1	14.856

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16550]	Sample type/isolated from	desert sand
[Ref.: #16550]	Geographic location (country and/or sea, region)	Saharan, Ouré Cassoni
[Ref.: #16550]	Country	Chad
[Ref.: #16550]	Country ISO 3 Code	TCD
[Ref.: #16550]	Continent	Africa

[Ref.: #62896]	Sample type/isolated from	arid desert soil
[Ref.: #62896]	Sampling date	2007
[Ref.: #62896]	Geographic location (country and/or sea, region)	Ouré Cassoni
[Ref.: #62896]	Country	Chad
[Ref.: #62896]	Country ISO 3 Code	TCD
[Ref.: #62896]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Sand of the Sahara Desert near Ouré Cassoni
[Ref.: #67770]	Country	Chad
[Ref.: #67770]	Country ISO 3 Code	TCD
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Sandy
#Condition	#Xerophilic	-

What are isolation sources categories?

Global distribution of 16S sequence HE654547 (>99% sequence identity) for Geodermatophilus arenarius subclade from Microbeatlas

Aquatic Samples	44
Soil Samples	487
Animal Samples	50
Plant Samples	32
Total Samples	613

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16550]	Geodermatophilus arenarius partial 16S rRNA gene, type strain CF 5/4T	HE654547	1511	ENA	1137990 tax ID

GC-content

75.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

Culture collection no.

DSM 45418, CCUG 62763, MTCC 11413, JCM 30063

SI-ID 405995

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Geodermatophilus telluris sp. nov., an actinomycete isolated from Saharan desert sand.	Montero-Calasanz MDC, Goker M, Potter G, Rohde M, Sproer C, Schumann P, Klenk HP, Gorbushina AA	Int J Syst Evol Microbiol	10.1099/ijs.0.046888-0	2012	*
Phylogeny	Geodermatophilus arenarius sp. nov., a xerophilic actinomycete isolated from Saharan desert sand in Chad.	Montero-Calasanz MC, Goker M, Potter G, Rohde M, Sproer C, Schumann P, Gorbushina AA, Klenk HP	Extremophiles	10.1007/s00792-012-0486-4	2012	*

References

#16550

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45418

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#62896 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62763

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75302

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405995.1 )

* These data were automatically processed and therefore are not curated

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