Name: Geopsychrobacter electrodiphilus A1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5789

Type strain:

Species: Geopsychrobacter electrodiphilus

Strain Designation: A1

Culture col. no.: DSM 16401, ATCC BAA-880, JCM 12469

Strain history: D. Holmes A1.

NCBI tax ID(s): 1121918 (strain), 225196 (species)

SI-ID 138005

ATCC BAA-880, DSM 16401, JCM 12469

Section

Geopsychrobacter electrodiphilus A1 is an anaerobe, psychrophilic, Gram-negative bacterium that was isolated from electrode and Fe oxide.

Gram-negative
anaerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfuromonadales*
	Family	*Geobacteraceae*
	Genus	*Geopsychrobacter*
	Species	**Geopsychrobacter electrodiphilus**
	Full Scientific Name (LPSN)	Geopsychrobacter electrodiphilus Holmes et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6430]

Culture medium

GEOANAEROBACTER MEDIUM (DSMZ Medium 838)

[Ref.: #6430]

Culture medium growth

[Ref.: #6430]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #6430]			growth	22 °C
[Ref.: #67770]			growth	22 °C

[Ref.: #6430]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6430]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %96.942

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6430]	Sample type/isolated from	electrode and Fe oxide
[Ref.: #6430]	Geographic location (country and/or sea, region)	Boston Harbor
[Ref.: #6430]	Country	USA
[Ref.: #6430]	Country ISO 3 Code	USA
[Ref.: #6430]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Marine sediment fuel cell constructed with sediments
[Ref.: #67770]	Geographic location (country and/or sea, region)	Boston Harbor, MA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered

#Industrial

#Industrial production

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY187303 (>99% sequence identity) for Geopsychrobacter electrodiphilus subclade from Microbeatlas

Aquatic Samples	725
Soil Samples	111
Animal Samples	30
Plant Samples	7
Total Samples	873

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6430]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6430]	Geopsychrobacter electrodiphilus strain A1 16S ribosomal RNA gene, partial sequence	AY187303	1493	ENA	225196 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Geopsychrobacter electrodiphilus DSM 16401	GCA_000384395	contig	GenBank	1121918 tax ID
[Ref.: #66792]	Geopsychrobacter electrodiphilus DSM 16401	1121918.7	wgs	PATRIC	1121918 tax ID	*
[Ref.: #66792]	Geopsychrobacter electrodiphilus DSM 16401	2522572047	draft	JGI IMG/M	1121918 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Geopsychrobacter electrodiphilus DSM 16401 PATRIC: 1121918.7
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Geopsychrobacter electrodiphilus DSM 16401 PATRIC: 1121918.7
[Ref.: #69480]	motile	no	70.886	no
[Ref.: #69480]	flagellated	no	86.518	no
[Ref.: #69480]	gram-positive	no	99.06	no
[Ref.: #69480]	anaerobic	yes	92.825	yes
[Ref.: #69480]	halophile	no	73.268	no
[Ref.: #69480]	spore-forming	no	91.525	no
[Ref.: #69480]	thermophile	no	98.607	yes
[Ref.: #69480]	glucose-util	yes	57.203	no
[Ref.: #69480]	aerobic	no	94.942	yes
[Ref.: #69480]	glucose-ferment	no	87.284	no

Availability in culture collections External links

[Ref.: #6430]

Culture collection no.

DSM 16401, ATCC BAA-880, JCM 12469

[Ref.: #75268]

SI-ID 138005

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Potential role of a novel psychrotolerant member of the family Geobacteraceae, Geopsychrobacter electrodiphilus gen. nov., sp. nov., in electricity production by a marine sediment fuel cell.	Holmes DE, Nicoll JS, Bond DR, Lovley DR	Appl Environ Microbiol	10.1128/AEM.70.10.6023-6030.2004	2004	*

References

#6430

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16401

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75268

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138005.1 )

* These data were automatically processed and therefore are not curated

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Geopsychrobacter electrodiphilus DSM 16401

Geopsychrobacter electrodiphilus DSM 16401

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