Tenacibaculum discolor (DSM 18842, NCIMB 14278, LL04 11.1.1)

Name: Tenacibaculum discolor (DSM 18842, NCIMB 14278, LL04 11.1.1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5655

Type strain

Strain Designation LL04 11.1.1, LL04.11.1.1

Culture col. no. DSM 18842 NCIMB 14278 LL04 11.1.1 LL04.11.1.1

NCBI tax ID(s) 361581

Special Collections DSMZ Literature strains

History DSMZ <- Y. Santos, USC; LL04.11.1.1

Links

Tenacibaculum discolor LL04 11.1.1 is an aerobe, Gram-negative, motile animal pathogen that was isolated from kidney of a diseased sole Solea senegalensis .

Gram-negative motile rod-shaped aerobe animal pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397407

NCIMB 14278,DSM 18842

@ref 20215

Last LPSN update 2026-05-29 08:26:13

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Tenacibaculum

Species Tenacibaculum discolor

Full scientific name Tenacibaculum discolor Piñeiro-Vidal et al. 2008

BacDive ID	Other strains from **Tenacibaculum discolor** (2)	Type strain
5656	T. discolor 2B13, DSM 25396
5657	T. discolor 9A5, DSM 25397

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
32374	negative	16 µm	0.5 µm	rod-shaped	gliding
125439	negative					98.67
125438						94
125438	negative					98.394

Pigmentation

32374

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7735	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7735	positive	growth	28
32374	positive	growth	14-38
32374	positive	optimum	27.5

Culture pH

@ref	Ability	Type	PH
32374	positive	growth	06-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32374	aerobe
125439	facultative anaerobe	90.295

Spore formation

@ref	Spore formation	Confidence
125439		99.612
125438		93.9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32374	29987 ChEBI	glutamate	+	carbon source
32374	17632 ChEBI	nitrate	+	reduction
32374	26271 ChEBI	proline	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32374	acid phosphatase	+	3.1.3.2
32374	alkaline phosphatase	+	3.1.3.1
32374	catalase	+	1.11.1.6
32374	cytochrome oxidase	+	1.9.3.1
32374	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Fishes	-
#Host Body-Site	#Urogenital tract	#Kidney

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
7735	kidney of a diseased sole Solea senegalensis (Kaup)	Solea senegalensis	Galicia	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence AM411030 (>99% sequence identity) for Tenacibaculum from Microbeatlas

Aquatic Samples	676
Soil Samples	35
Animal Samples	98
Plant Samples	3
Total Samples	812

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
7735		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM366418v1 assembly for Tenacibaculum discolor DSM 18842	contig	GCA_003664185	361581.3	2734482798	361581	74.13

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7735	Tenacibaculum discolor partial 16S rRNA gene, type strain LL0411.1.1T	AM411030	1512		361581

GC content

7735

GC-content (mol%)32.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM366418v1 assembly for Tenacibaculum discolor DSM 18842
BV-BRC: 361581.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.30	no
125439	gram_stain	BacteriaNetⓘ	negative	98.67	no
125439	motility	BacteriaNetⓘ	no	75.84	no
125439	spore_formation	BacteriaNetⓘ	no	99.61	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tenacibaculum discolor strain DSM 18842
PATRIC: 361581.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.39	no
125438	anaerobic	anaerobicⓘ	no	95.35	yes
125438	spore-forming	spore-formingⓘ	no	93.90	no
125438	aerobic	aerobicⓘ	yes	87.63	yes
125438	thermophilic	thermophileⓘ	no	96.45	yes
125438	flagellated	motile2+ⓘ	no	94.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft Genome Sequence of the Iridescent Marine Bacterium Tenacibaculum discolor Strain IMLK18.	Kee HL, Mikheyeva IV, Mickol RL, Dawson SC, Newman DK, Leadbetter JR.	Microbiol Resour Announc	10.1128/mra.01683-18	2019
	Characterization of bacteria in ballast water using MALDI-TOF mass spectrometry.	Emami K, Askari V, Ullrich M, Mohinudeen K, Anil AC, Khandeparker L, Burgess JG, Mesbahi E.	PLoS One	10.1371/journal.pone.0038515	2012
Phylogeny	Tenacibaculum discolor sp. nov. and Tenacibaculum gallaicum sp. nov., isolated from sole (Solea senegalensis) and turbot (Psetta maxima) culture systems.	Pineiro-Vidal M, Riaza A, Santos Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65397-0	2008

References

#7735	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18842
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28602	IJSEM 21 2008 ( DOI 10.1099/ijs.0.65397-0 , PubMed 18175676 )
#32374	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28602
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Tenacibaculum discolor (DSM 18842, NCIMB 14278, LL04 11.1.1)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003664185

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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