Name: Tenacibaculum discolor LL04 11.1.1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5655

Type strain:

Species: Tenacibaculum discolor

Strain Designation: LL04 11.1.1, LL04.11.1.1

Culture col. no.: DSM 18842, NCIMB 14278

Strain history: <- Y. Santos, USC; LL04.11.1.1

NCBI tax ID(s): 361581 (species)

SI-ID 397407

DSM 18842

Other strains from Tenacibaculum discolor

T. discolor 2B13, DSM 25396
T. discolor 9A5, DSM 25397

Section

Tenacibaculum discolor LL04 11.1.1 is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from kidney of a diseased sole Solea senegalensis .

Gram-negative
motile
rod-shaped
aerobe
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Tenacibaculum*
	Species	**Tenacibaculum discolor**
	Full Scientific Name (LPSN)	Tenacibaculum discolor Piñeiro-Vidal et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32374]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.984

[Ref.: #32374]	Cell length	16 µm

[Ref.: #32374]	Cell width	0.5 µm

[Ref.: #32374]	Cell shape	rod-shaped

[Ref.: #32374]	Motility	yes

[Ref.: #32374]	Flagellum arrangement	gliding

[Ref.: #32374]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7735]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7735]

Culture medium growth

[Ref.: #7735]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7735]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7735]	growth	28 °C
[Ref.: #32374]	growth	14-38 °C
[Ref.: #32374]	optimum	27.5 °C

[Ref.: #7735]	Temperature range	mesophilic
[Ref.: #32374]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32374]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32374]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32374]	glutamate ChEBI	+	carbon source
[Ref.: #32374]	nitrate ChEBI	+	reduction
[Ref.: #32374]	proline ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32374]	acid phosphatase	+	3.1.3.2
[Ref.: #32374]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32374]	catalase	+	1.11.1.6
[Ref.: #32374]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32374]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7735]	Sample type/isolated from	kidney of a diseased sole Solea senegalensis (Kaup)
[Ref.: #7735]	Host species	Solea senegalensis
[Ref.: #7735]	Geographic location (country and/or sea, region)	Galicia
[Ref.: #7735]	Country	Spain
[Ref.: #7735]	Country ISO 3 Code	ESP
[Ref.: #7735]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Fishes	-
#Host Body-Site	#Urogenital tract	#Kidney

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM411030 (>99% sequence identity) for Tenacibaculum from Microbeatlas

Aquatic Samples	676
Soil Samples	35
Animal Samples	98
Plant Samples	3
Total Samples	812

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7735]	Pathogenicity (animal)	yes
[Ref.: #7735]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7735]	Tenacibaculum discolor partial 16S rRNA gene, type strain LL0411.1.1T	AM411030	1512	ENA	361581 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tenacibaculum discolor DSM 18842	GCA_003664185	contig	GenBank	361581 tax ID	*
[Ref.: #66792]	Tenacibaculum discolor strain DSM 18842	361581.3	wgs	PATRIC	361581 tax ID	*
[Ref.: #66792]	Tenacibaculum discolor DSM 18842	2734482798	draft	JGI IMG/M	361581 tax ID	*

[Ref.: #7735]

GC-content

32.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Tenacibaculum discolor strain DSM 18842 PATRIC: 361581.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tenacibaculum discolor strain DSM 18842 PATRIC: 361581.3
[Ref.: #69480]	gram-positive	no	98.333	yes
[Ref.: #69480]	anaerobic	no	99.468	no
[Ref.: #69480]	halophile	no	81.262	no
[Ref.: #69480]	spore-forming	no	95.18	no
[Ref.: #69480]	glucose-util	yes	77.431	no
[Ref.: #69480]	motile	no	86.242	no
[Ref.: #69480]	flagellated	no	95.764	yes
[Ref.: #69480]	aerobic	yes	89.845	yes
[Ref.: #69480]	thermophile	no	98.553	yes
[Ref.: #69480]	glucose-ferment	no	93.896	no

Availability in culture collections External links

[Ref.: #7735]

Culture collection no.

DSM 18842, NCIMB 14278

[Ref.: #75138]

SI-ID 397407

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tenacibaculum discolor sp. nov. and Tenacibaculum gallaicum sp. nov., isolated from sole (Solea senegalensis) and turbot (Psetta maxima) culture systems.	Pineiro-Vidal M, Riaza A, Santos Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65397-0	2008	*

References

#7735

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18842

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32374

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28602 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75138

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397407.1 )

#28602

IJSEM 21 2008 ( DOI 10.1099/ijs.0.65397-0 , PubMed 18175676 )

* These data were automatically processed and therefore are not curated

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Tenacibaculum discolor strain DSM 18842

Tenacibaculum discolor strain DSM 18842

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