Myroides marinus (DSM 23048, JCM 16529, KCTC 23023)

Name: Myroides marinus (DSM 23048, JCM 16529, KCTC 23023)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5623

Type strain

Strain Designation JS-08

Culture col. no. DSM 23048 JCM 16529 KCTC 23023 JS-08 CIP 110392

NCBI tax ID(s) 703342

Special Collections DSMZ JCM KCTC CIP Literature strains

Links

Myroides marinus JS-08 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from seawater.

Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 377091

JCM 16529,KCTC 23023,DSM 23048,CIP 110392

@ref 20215

Last LPSN update 2025-12-16 09:48:06

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Myroides

Species Myroides marinus

Full scientific name Myroides marinus Cho et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29884	negative	0.8 µm	0.25 µm	rod-shaped
67771	negative
120816	negative			rod-shaped
125438	negative				97.345

Pigmentation

29884

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16670	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
36630	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
120816	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16670	positive	growth	28	mesophilic
29884	positive	growth	10-37
29884	positive	optimum	30	mesophilic
36630	positive	growth	25	mesophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29884	positive	optimum	6.5
29884	positive	growth	05-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29884	aerobe
67771	aerobe

Spore formation

29884

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29884	NaCl	positive	growth	0-5 %
29884	NaCl	positive	optimum	2.5 %

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29884	62064 ChEBI	2,3-butanediol	+	carbon source
29884	16449 ChEBI	alanine	+	carbon source
29884	22653 ChEBI	asparagine	+	carbon source
29884	35391 ChEBI	aspartate	+	carbon source
29884	16947 ChEBI	citrate	+	carbon source
29884	17596 ChEBI	inosine	+	carbon source
29884	25017 ChEBI	leucine	+	carbon source
29884	26271 ChEBI	proline	+	carbon source
29884	17272 ChEBI	propionate	+	carbon source
29884	17822 ChEBI	serine	+	carbon source
29884	30031 ChEBI	succinate	+	carbon source
29884	26986 ChEBI	threonine	+	carbon source
29884	53423 ChEBI	tween 40	+	carbon source
29884	53425 ChEBI	tween 60	+	carbon source
29884	53426 ChEBI	tween 80	+	carbon source
29884	16704 ChEBI	uridine	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
29884	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
29884	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
29884	acid phosphatase	+	3.1.3.2
29884	alkaline phosphatase	+	3.1.3.1
29884	catalase	+	1.11.1.6
29884	cytochrome oxidase	+	1.9.3.1
29884	gelatinase	+
29884	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16670	seawater	Chungnam, Boryeong	Republic of Korea	KOR	Asia
67770	Seawater	Boryeong Province, Chungnam	Japan	JPN	Asia
67771	From seawater	Daechun	Republic of Korea	KOR	Asia
120816	Environment, Seawater	Collected off Boryeong, Chungnam	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence GQ857652 (>99% sequence identity) for Myroides from Microbeatlas

Aquatic Samples	379
Soil Samples	614
Animal Samples	1279
Plant Samples	85
Total Samples	2357

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16670	1	Risk group (German classification) According to TRBA 466
120816	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2615840711 annotated assembly for Myroides marinus DSM 23048	scaffold	GCA_900109075	703342.6	2615840711	703342	66.38

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16670	Myroides marinus strain JS-08 16S ribosomal RNA gene, partial sequence	GQ857652	1388		703342

GC content

@ref	GC-content (mol%)	Method
16670	34.2
67770	34.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Myroides marinus DSM 23048
NCBI: GCA_900109075

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	82.50	no
125439	motility	BacteriaNetⓘ	no	69.20	no
125439	gram_stain	BacteriaNetⓘ	negative	87.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	71.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Myroides marinus strain DSM 23048
PATRIC: 703342.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.35	yes
125438	anaerobic	anaerobicⓘ	no	95.68	no
125438	spore-forming	spore-formingⓘ	no	88.29	yes
125438	aerobic	aerobicⓘ	yes	87.02	yes
125438	thermophilic	thermophileⓘ	no	95.91	no
125438	flagellated	motile2+ⓘ	no	87.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Myroides indicus sp. nov., isolated from garden soil.	Ram H, Kumar A, Thomas L, Dastager SG, Mawlankar R, Singh VP	Int J Syst Evol Microbiol	10.1099/ijsem.0.000530	2015
Phylogeny	Myroides xuanwuensis sp. nov., a mineral-weathering bacterium isolated from forest soil.	Zhang ZD, He LY, Huang Z, Sheng XF	Int J Syst Evol Microbiol	10.1099/ijs.0.056739-0	2013
Phylogeny	Myroides phaeus sp. nov., isolated from human saliva, and emended descriptions of the genus Myroides and the species Myroides profundi Zhang et al. 2009 and Myroides marinus Cho et al. 2011.	Yan S, Zhao N, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.029215-0	2011
Phylogeny	Myroides marinus sp. nov., a member of the family Flavobacteriaceae, isolated from seawater.	Cho SH, Chae SH, Im WT, Kim SB	Int J Syst Evol Microbiol	10.1099/ijs.0.024067-0	2010

References

#16670	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23048
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26257	IJSEM 938 2011 ( DOI 10.1099/ijs.0.024067-0 , PubMed 20495024 )
#29884	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26257
#36630	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120816	Collection of Institut Pasteur ; Curators of the CIP; CIP 110392
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Myroides marinus (DSM 23048, JCM 16529, KCTC 23023)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900109075

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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