Maribacter stanieri (DSM 19891, KCTC 22023, LMG 22581)

Name: Maribacter stanieri (DSM 19891, KCTC 22023, LMG 22581)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5615

Type strain

Culture col. no. DSM 19891 KCTC 22023 LMG 22581 KMM 6046

NCBI tax ID(s) 440514

Special Collections DSMZ KCTC Literature strains

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Maribacter stanieri DSM 19891 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from green alga Ulva fenestrata.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 399937

LMG 22581,KCTC 22023,DSM 19891

@ref 20215

Last LPSN update 2025-12-16 09:48:06

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Maribacter

Species Maribacter stanieri

Full scientific name Maribacter stanieri Nedashkovskaya et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
29396	negative	3.85 µm	0.4 µm	rod-shaped	gliding
125438						93
125438	negative					98.5
125439	negative					98.9

Pigmentation

29396

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8372	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8372	positive	growth	28	mesophilic
29396	positive	growth	04-35
29396	positive	optimum	25.5	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29396	positive	optimum	7.25
29396	positive	growth	5.5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29396	aerobe
125438	aerobe	90.381
125439	obligate aerobe	96.9

Spore formation

@ref	Spore formation	Confidence
125438		90.203
125439		92.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29396	NaCl	positive	growth	0.5-8 %
29396	NaCl	positive	optimum	1.25 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29396	17128 ChEBI	adipate	+	carbon source
29396	22599 ChEBI	arabinose	+	carbon source
29396	16947 ChEBI	citrate	+	carbon source
29396	4853 ChEBI	esculin	+	hydrolysis
29396	24265 ChEBI	gluconate	+	carbon source
29396	25115 ChEBI	malate	+	carbon source
29396	29864 ChEBI	mannitol	+	carbon source
29396	37684 ChEBI	mannose	+	carbon source
29396	506227 ChEBI	N-acetylglucosamine	+	carbon source
29396	17632 ChEBI	nitrate	+	reduction

Enzymes

@ref	Value	Activity	Ec
29396	acid phosphatase	+	3.1.3.2
29396	alkaline phosphatase	+	3.1.3.1
29396	alpha-galactosidase	+	3.2.1.22
29396	catalase	+	1.11.1.6
29396	cytochrome oxidase	+	1.9.3.1
29396	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Green algae

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
8372	green alga Ulva fenestrata	Ulva fenestrata	Sea of Japan, Gulf of Peter the Great, Troitsa Bay	Russia	RUS	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU246691 (>99% sequence identity) for Maribacter from Microbeatlas

Aquatic Samples	355
Soil Samples	7
Animal Samples	44
Plant Samples	3
Total Samples	409

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8372	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2622736542 annotated assembly for Maribacter stanieri DSM 19891	scaffold	GCA_900112245	440514.5	2622736542	440514	76.16

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8372	Maribacter stanieri strain KMM 6046 16S ribosomal RNA gene, partial sequence	EU246691	1432		440514
124043	Maribacter stanieri strain KMM 6046 16S ribosomal RNA gene, partial sequence.	EF536747	1431		440514

GC content

@ref	GC-content (mol%)	Method
8372	36.6	thermal denaturation, midpoint method (Tm)
29396	36-37

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Maribacter stanieri DSM 19891
NCBI: GCA_900112245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	92.10	no
125439	motility	BacteriaNetⓘ	no	63.20	no
125439	gram_stain	BacteriaNetⓘ	negative	98.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Maribacter stanieri DSM 19891
NCBI: GCA_900112245.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	yes
125438	anaerobic	anaerobicⓘ	no	95.94	yes
125438	aerobic	aerobicⓘ	yes	90.38	no
125438	spore-forming	spore-formingⓘ	no	90.20	no
125438	thermophilic	thermophileⓘ	no	98.97	yes
125438	flagellated	motile2+ⓘ	no	93.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Shell Disease Syndrome Is Associated with Reduced and Shifted Epibacterial Diversity on the Carapace of the Crustacean Cancer pagurus.	Bergen N, Kramer P, Romberg J, Wichels A, Gerlach G, Brinkhoff T.	Microbiol Spectr	10.1128/spectrum.03419-22	2022
Phylogeny	Maribacter caenipelagi sp. nov., a member of the Flavobacteriaceae isolated from a tidal flat sediment of the Yellow Sea in Korea.	Jung YT, Lee JS, Yoon JH	Antonie Van Leeuwenhoek	10.1007/s10482-014-0243-z	2014
Phylogeny	Maribacter stanieri sp. nov., a marine bacterium of the family Flavobacteriaceae.	Nedashkovskaya OI, Kim SB, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.012286-0	2009

References

#8372	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19891
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29396	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25803 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Maribacter stanieri (DSM 19891, KCTC 22023, LMG 22581)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900112245

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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