Maribacter polysiphoniae (DSM 23514, KCTC 22021, KMM 6151)

Name: Maribacter polysiphoniae (DSM 23514, KCTC 22021, KMM 6151)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5609

Type strain

Culture col. no. DSM 23514 KCTC 22021 KMM 6151 LMG 23671

NCBI tax ID(s) 429344

Special Collections DSMZ KCTC Literature strains

History <- KCTC <- O. N. Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok, Russia

Links

Maribacter polysiphoniae DSM 23514 is an aerobe, Gram-negative, motile bacterium that was isolated from red alga Polysiphonia japonica .

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 264726

LMG 23671,KCTC 22021,DSM 23514

@ref 20215

Last LPSN update 2026-02-09 11:19:00

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Maribacter

Species Maribacter polysiphoniae

Full scientific name Maribacter polysiphoniae Nedashkovskaya et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
32242	negative	5.6 µm	0.5 µm	rod-shaped	gliding
125438						95.5
125438	negative					97
125439	negative					99.3

Pigmentation

32242

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17252	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17252	positive	growth	28
32242	positive	growth	04-41
32242	positive	optimum	31

Culture pH

@ref	Ability	Type	PH	PH range
32242	positive	optimum	8
32242	positive	growth	5.5-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

32242

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125438		92.833
125439		97

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32242	NaCl	positive	growth	01-08 %
32242	NaCl	positive	optimum	1.75 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32242	22599 ChEBI	arabinose	+	carbon source
32242	17057 ChEBI	cellobiose	+	carbon source
32242	4853 ChEBI	esculin	+	hydrolysis
32242	28757 ChEBI	fructose	+	carbon source
32242	28260 ChEBI	galactose	+	carbon source
32242	17234 ChEBI	glucose	+	carbon source
32242	17716 ChEBI	lactose	+	carbon source
32242	17306 ChEBI	maltose	+	carbon source
32242	29864 ChEBI	mannitol	+	carbon source
32242	37684 ChEBI	mannose	+	carbon source
32242	28053 ChEBI	melibiose	+	carbon source
32242	506227 ChEBI	N-acetylglucosamine	+	carbon source
32242	16634 ChEBI	raffinose	+	carbon source
32242	17992 ChEBI	sucrose	+	carbon source
32242	53424 ChEBI	tween 20	+	carbon source
32242	53423 ChEBI	tween 40	+	carbon source
32242	53426 ChEBI	tween 80	+	carbon source
32242	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32242	alkaline phosphatase	+	3.1.3.1
32242	catalase	+	1.11.1.6
32242	cytochrome oxidase	+	1.9.3.1
32242	gelatinase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	methylglyoxal degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	acetate fermentation	100	4 of 4
66794	threonine metabolism	100	10 of 10
66794	CMP-KDO biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	kanosamine biosynthesis II	100	2 of 2
66794	vitamin K metabolism	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	glycogen metabolism	100	5 of 5
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	cellulose degradation	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	folate polyglutamylation	100	1 of 1
66794	pentose phosphate pathway	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	heme metabolism	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	proline metabolism	81.82	9 of 11
66794	propionate fermentation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	pyrimidine metabolism	80	36 of 45
66794	starch degradation	80	8 of 10
66794	purine metabolism	78.72	74 of 94
66794	valine metabolism	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	glutamate and glutamine metabolism	75	21 of 28
66794	tryptophan metabolism	73.68	28 of 38
66794	flavin biosynthesis	73.33	11 of 15
66794	citric acid cycle	71.43	10 of 14
66794	tyrosine metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	methionine metabolism	69.23	18 of 26
66794	alanine metabolism	68.97	20 of 29
66794	histidine metabolism	68.97	20 of 29
66794	formaldehyde oxidation	66.67	2 of 3
66794	lysine metabolism	66.67	28 of 42
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	glutathione metabolism	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	metabolism of disaccharids	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	lipid metabolism	61.29	19 of 31
66794	degradation of pentoses	60.71	17 of 28
66794	degradation of sugar acids	60	15 of 25
66794	myo-inositol biosynthesis	60	6 of 10
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	ascorbate metabolism	59.09	13 of 22
66794	arginine metabolism	58.33	14 of 24
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	degradation of hexoses	55.56	10 of 18
66794	cysteine metabolism	55.56	10 of 18
66794	carotenoid biosynthesis	54.55	12 of 22
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	cyclohexanol degradation	50	2 of 4
66794	sphingosine metabolism	50	3 of 6
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	glycine metabolism	50	5 of 10
66794	isoprenoid biosynthesis	50	13 of 26
66794	ethanol fermentation	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	urea cycle	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	degradation of sugar alcohols	43.75	7 of 16
66794	mevalonate metabolism	42.86	3 of 7
66794	oxidative phosphorylation	41.76	38 of 91
66794	phenol degradation	40	8 of 20
66794	lipoate biosynthesis	40	2 of 5
66794	sulfate reduction	38.46	5 of 13
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	cyanate degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	vitamin B1 metabolism	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	polyamine pathway	26.09	6 of 23
66794	carnitine metabolism	25	2 of 8
66794	toluene degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Red algae

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
17252	red alga Polysiphonia japonica	Polysiphonia japonica	Sea of Japan, Gulf of Peter the Great, Troitsa Bay	Russia	RUS	Asia

Taxonmaps

69479

Global distribution of 16S sequence AM497875 (>99% sequence identity) for Maribacter polysiphoniae subclade from Microbeatlas

Aquatic Samples	303
Soil Samples	6
Animal Samples	16
Plant Samples	1
Total Samples	326

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17252	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1467343v1 assembly for Maribacter polysiphoniae KCTC 22021	contig	GCA_014673435	429344.11	8117147243	429344	68.72
66792	ASM314866v1 assembly for Maribacter polysiphoniae DSM 23514	scaffold	GCA_003148665	429344.6	2595698208	429344	67.49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17252	Maribacter polysiphoniae 16S rRNA gene, strain LMG 23671T	AM497875	1481		429344

GC content

@ref	GC-content (mol%)	Method
17252	41.1	thermal denaturation, midpoint method (Tm)
32242	41.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Maribacter polysiphoniae DSM 23514
NCBI: GCA_003148665

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.00	no
125439	motility	BacteriaNetⓘ	no	67.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	65.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Maribacter polysiphoniae DSM 23514
NCBI: GCA_003148665.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	yes
125438	anaerobic	anaerobicⓘ	no	92.51	yes
125438	aerobic	aerobicⓘ	yes	81.87	no
125438	spore-forming	spore-formingⓘ	no	92.83	no
125438	thermophilic	thermophileⓘ	no	97.63	yes
125438	flagellated	motile2+ⓘ	no	95.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Short prokaryotic Argonaute systems trigger cell death upon detection of invading DNA.	Koopal B, Potocnik A, Mutte SK, Aparicio-Maldonado C, Lindhoud S, Vervoort JJM, Brouns SJJ, Swarts DC.	Cell	10.1016/j.cell.2022.03.012	2022
	Maribacter aquimaris sp. nov., isolated from seawater adjacent to Fildes Peninsula, Antarctica.	Zhang Y, Zhai Y, Mu L, Hu M, Fang W, Xiao Y, Fang Z.	Antonie Van Leeuwenhoek	10.1007/s10482-023-01844-x	2023
Phylogeny	Maribacter luteus sp. nov., a marine bacterium isolated from intertidal sand of the Yellow Sea.	Liu A, Zhang YJ, Liu DK, Li XZ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004206	2020
Phylogeny	Maribacter maritimus sp. nov., isolated from seawater.	Kang H, Cha I, Kim H, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002843	2018
Phylogeny	Maribacter arenosus sp. nov., isolated from marine sediment.	Thongphrom C, Kim JH, Kim W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001436	2016
Phylogeny	Maribacter polysiphoniae sp. nov., isolated from a red alga.	Nedashkovskaya OI, Vancanneyt M, De Vos P, Kim SB, Lee MS, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.65181-0	2007

References

#17252	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23514
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28483	IJSEM 2840 2007 ( DOI 10.1099/ijs.0.65181-0 , PubMed 18048735 )
#32242	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28483
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Maribacter polysiphoniae (DSM 23514, KCTC 22021, KMM 6151)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014673435

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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