Name: Maribacter polysiphoniae DSM 23514
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5609

Type strain:

Species: Maribacter polysiphoniae

Culture col. no.: DSM 23514, KCTC 22021, KMM 6151, LMG 23671

Strain history: <- KCTC <- O. N. Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok, Russia

NCBI tax ID(s): 429344 (species)

SI-ID 264726

LMG 23671, KCTC 22021, DSM 23514

Section

Maribacter polysiphoniae DSM 23514 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from red alga Polysiphonia japonica .

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Maribacter*
	Species	**Maribacter polysiphoniae**
	Full Scientific Name (LPSN)	Maribacter polysiphoniae Nedashkovskaya et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32242]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.868

[Ref.: #32242]	Cell length	5.6 µm

[Ref.: #32242]	Cell width	0.5 µm

[Ref.: #32242]	Cell shape	rod-shaped

[Ref.: #32242]	Motility	yes

[Ref.: #32242]	Flagellum arrangement	gliding

[Ref.: #32242]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17252]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17252]

Culture medium growth

[Ref.: #17252]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17252]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17252]	growth	28 °C
[Ref.: #32242]	growth	04-41 °C
[Ref.: #32242]	optimum	31 °C

[Ref.: #17252]	Temperature range	mesophilic
[Ref.: #32242]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32242]			optimum	8
[Ref.: #32242]			growth	5.5-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32242]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32242]		NaCl		growth	01-08	%
[Ref.: #32242]		NaCl		optimum	1.75	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32242]	arabinose ChEBI	+	carbon source
[Ref.: #32242]	cellobiose ChEBI	+	carbon source
[Ref.: #32242]	esculin ChEBI	+	hydrolysis
[Ref.: #32242]	fructose ChEBI	+	carbon source
[Ref.: #32242]	galactose ChEBI	+	carbon source
[Ref.: #32242]	glucose ChEBI	+	carbon source
[Ref.: #32242]	lactose ChEBI	+	carbon source
[Ref.: #32242]	maltose ChEBI	+	carbon source
[Ref.: #32242]	mannitol ChEBI	+	carbon source
[Ref.: #32242]	mannose ChEBI	+	carbon source
[Ref.: #32242]	melibiose ChEBI	+	carbon source
[Ref.: #32242]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32242]	raffinose ChEBI	+	carbon source
[Ref.: #32242]	sucrose ChEBI	+	carbon source
[Ref.: #32242]	tween 20 ChEBI	+	carbon source
[Ref.: #32242]	tween 40 ChEBI	+	carbon source
[Ref.: #32242]	tween 80 ChEBI	+	carbon source
[Ref.: #32242]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32242]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32242]	catalase	+	1.11.1.6
[Ref.: #32242]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32242]	gelatinase	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	pyrimidine metabolism	80	36 of 45
[Ref.: #66794]	starch degradation	80	8 of 10
[Ref.: #66794]	purine metabolism	78.72	74 of 94
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	lipid A biosynthesis	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	tryptophan metabolism	73.68	28 of 38
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	histidine metabolism	68.97	20 of 29
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	lysine metabolism	66.67	28 of 42
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	glutathione metabolism	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	degradation of pentoses	60.71	17 of 28
[Ref.: #66794]	degradation of sugar acids	60	15 of 25
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	ascorbate metabolism	59.09	13 of 22
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	degradation of hexoses	55.56	10 of 18
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	carotenoid biosynthesis	54.55	12 of 22
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	sphingosine metabolism	50	3 of 6
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	isoprenoid biosynthesis	50	13 of 26
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	degradation of sugar alcohols	43.75	7 of 16
[Ref.: #66794]	mevalonate metabolism	42.86	3 of 7
[Ref.: #66794]	oxidative phosphorylation	41.76	38 of 91
[Ref.: #66794]	phenol degradation	40	8 of 20
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	3-phenylpropionate degradation	33.33	5 of 15
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	vitamin B1 metabolism	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	polyamine pathway	26.09	6 of 23
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17252]	Sample type/isolated from	red alga Polysiphonia japonica
[Ref.: #17252]	Host species	Polysiphonia japonica
[Ref.: #17252]	Geographic location (country and/or sea, region)	Sea of Japan, Gulf of Peter the Great, Troitsa Bay
[Ref.: #17252]	Country	Russia
[Ref.: #17252]	Country ISO 3 Code	RUS
[Ref.: #17252]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Algae

#Red algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM497875 (>99% sequence identity) for Maribacter polysiphoniae subclade from Microbeatlas

Aquatic Samples	303
Soil Samples	6
Animal Samples	16
Plant Samples	1
Total Samples	326

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17252]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17252]	Maribacter polysiphoniae 16S rRNA gene, strain LMG 23671T	AM497875	1481	ENA	429344 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Maribacter polysiphoniae DSM 23514	GCA_003148665	scaffold	GenBank	429344 tax ID	*
[Ref.: #66792]	Maribacter polysiphoniae KCTC 22021	GCA_014673435	contig	GenBank	429344 tax ID	*
[Ref.: #66792]	Maribacter polysiphoniae strain DSM 23514	429344.6	wgs	PATRIC	429344 tax ID	*
[Ref.: #66792]	Maribacter polysiphoniae strain KCTC 22021	429344.11	wgs	PATRIC	429344 tax ID	*
[Ref.: #66792]	Maribacter polysiphoniae DSM 23514	2595698208	draft	JGI IMG/M	429344 tax ID	*

[Ref.: #17252]	GC-content	41.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #32242]	GC-content	41.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Maribacter polysiphoniae DSM 23514 NCBI: GCA_003148665.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Maribacter polysiphoniae DSM 23514 NCBI: GCA_003148665.1
[Ref.: #69480]	flagellated	no	94.981	yes
[Ref.: #69480]	gram-positive	no	97.575	no
[Ref.: #69480]	anaerobic	no	98.67	yes
[Ref.: #69480]	halophile	no	79.33	no
[Ref.: #69480]	spore-forming	no	96.429	no
[Ref.: #69480]	glucose-util	yes	87.106	no
[Ref.: #69480]	aerobic	yes	80.849	yes
[Ref.: #69480]	thermophile	no	98.171	no
[Ref.: #69480]	motile	no	90.958	no
[Ref.: #69480]	glucose-ferment	no	87.52	no

Availability in culture collections External links

[Ref.: #17252]

Culture collection no.

DSM 23514, KCTC 22021, KMM 6151, LMG 23671

[Ref.: #75091]

SI-ID 264726

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Maribacter luteus sp. nov., a marine bacterium isolated from intertidal sand of the Yellow Sea.	Liu A, Zhang YJ, Liu DK, Li XZ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004206	2020	*
Phylogeny	Maribacter maritimus sp. nov., isolated from seawater.	Kang H, Cha I, Kim H, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002843	2018	*
Phylogeny	Maribacter arenosus sp. nov., isolated from marine sediment.	Thongphrom C, Kim JH, Kim W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001436	2016	*
Phylogeny	Maribacter polysiphoniae sp. nov., isolated from a red alga.	Nedashkovskaya OI, Vancanneyt M, De Vos P, Kim SB, Lee MS, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.65181-0	2007	*

References

#17252

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23514

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32242

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28483 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75091

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID264726.1 )

#28483

IJSEM 2840 2007 ( DOI 10.1099/ijs.0.65181-0 , PubMed 18048735 )

* These data were automatically processed and therefore are not curated

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