Name: Leeuwenhoekiella marinoflava DSM 3653
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5602

Type strain:

Species: Leeuwenhoekiella marinoflava

Culture col. no.: DSM 3653, ATCC 19326, IAM 14116, NCMB 397, JCM 31008, IFO 14170, IFO 15939, JCM 8517, KCTC 2915, LMG 1345, NBRC 14170, NBRC 15939, NCIMB 397

Strain history: LMG 1345 <-- NCIMB 397 <-- R. Spencer SW1 (Flavobacterium sp.).

NCBI tax ID(s): 1122159 (strain), 988 (species)

SI-ID 2152

LMG 1345, ATCC 19326, DSM 2042, NCMB 397, DSM 3653, IAM 14116, JCM 8517, NCIMB 397, IFO14170, IFO 15939, KCTC 2915, NBRC 14170, NBRC 15939, JCM 31008

Section

Leeuwenhoekiella marinoflava DSM 3653 is a psychrophilic, Gram-negative bacterium that was isolated from seawater.

Gram-negative
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Leeuwenhoekiella*
	Species	**Leeuwenhoekiella marinoflava**
	Full Scientific Name (LPSN)	Leeuwenhoekiella marinoflava (Reichenbach 1989 ex Colwell et al. 1966) Nedashkovskaya et al. 2005

Synonym

Cytophaga marinoflava

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.984

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1437]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #1437]

Culture medium growth

[Ref.: #1437]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1437]

Culture medium composition

expand / minimize

[Ref.: #1437]

Culture medium

CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172)

[Ref.: #1437]

Culture medium growth

[Ref.: #1437]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1437]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #1437]	growth	20 °C
[Ref.: #1437]	growth	20-25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #1437]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1437]	Sample type/isolated from	seawater
[Ref.: #1437]	Geographic location (country and/or sea, region)	Scotland, Aberdeen
[Ref.: #1437]	Country	United Kingdom
[Ref.: #1437]	Country ISO 3 Code	GBR
[Ref.: #1437]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Seawater in the North Sea off Aberdeen
[Ref.: #67770]	Geographic location (country and/or sea, region)	Scotland
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB680577 (>99% sequence identity) for Leeuwenhoekiella from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples	1
Plant Samples
Total Samples	2

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1437]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1437]	Cytophaga marinoflava 16S ribosomal RNA gene, partial sequence	M58770	1478	ENA	988 tax ID
[Ref.: #20218]	Cytophaga marinoflava 16S ribosomal RNA gene, partial sequence	AF203475	1445	ENA	988 tax ID	*
[Ref.: #20218]	Leeuwenhoekiella marinoflava gene for 16S rRNA, partial sequence, strain: NBRC 14170	AB680577	1453	ENA	988 tax ID	*
[Ref.: #20218]	Leeuwenhoekiella marinoflava gene for 16S ribosomal RNA, partial sequence, strain: NCIMB 397	D12668	1257	ENA	988 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Leeuwenhoekiella marinoflava DSM 3653	GCA_900129005	scaffold	GenBank	1122159 tax ID
[Ref.: #67770]	Leeuwenhoekiella marinoflava LMG 1345	GCA_004104035	contig	GenBank	988 tax ID
[Ref.: #66792]	Leeuwenhoekiella marinoflava DSM 3653	1122159.4	wgs	PATRIC	1122159 tax ID	*
[Ref.: #66792]	Leeuwenhoekiella marinoflava strain LMG 1345	988.5	wgs	PATRIC	988 tax ID	*
[Ref.: #66792]	Leeuwenhoekiella marinoflava DSM 3653	2582581269	draft	JGI IMG/M	1122159 tax ID	*
[Ref.: #66792]	Leeuwenhoekiella marinoflava LMG 1345	2772190910	draft	JGI IMG/M	988 tax ID	*

[Ref.: #1437]	GC-content	37.0 mol%
[Ref.: #67770]	GC-content	37 mol%	Buoyant density centrifugation (BD)
[Ref.: #67770]	GC-content	38 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Leeuwenhoekiella marinoflava DSM 3653 DSM 3653 NCBI: GCA_900129005.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leeuwenhoekiella marinoflava DSM 3653 PATRIC: 1122159.4
[Ref.: #69480]	motile	no	84.959	no
[Ref.: #69480]	flagellated	no	93.896	no
[Ref.: #69480]	gram-positive	no	97.69	no
[Ref.: #69480]	anaerobic	no	99.672	no
[Ref.: #69480]	aerobic	yes	90.356	no
[Ref.: #69480]	halophile	no	62.571	no
[Ref.: #69480]	spore-forming	no	95.364	no
[Ref.: #69480]	thermophile	no	99.526	no
[Ref.: #69480]	glucose-util	yes	88.921	no
[Ref.: #69480]	glucose-ferment	no	87.841	no

Availability in culture collections External links

[Ref.: #1437]

Culture collection no.

DSM 3653, ATCC 19326, IAM 14116, NCMB 397, JCM 31008, IFO 14170, IFO 15939, JCM 8517, KCTC 2915, LMG 1345, NBRC 14170, NBRC 15939, NCIMB 397

[Ref.: #75084]

SI-ID 2152

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavimarina flava sp. nov., isolated from Salicornia herbacea.	Cho ES, Cha IT, Park JM, Choi HJ, Lee JH, Roh SW, Cho EA, Kweon MH, Nam YD, Seo MJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002292	2017	*
Phylogeny	Leeuwenhoekiella polynyae sp. nov., isolated from a polynya in western Antarctica.	Si OJ, Kim SJ, Jung MY, Choi SB, Kim JG, Kim SG, Roh SW, Lee S, Rhee SK	Int J Syst Evol Microbiol	10.1099/ijs.0.000160	2015	*
Enzymology	Purification of a marine bacterial glucose dehydrogenase from Cytophaga marinoflava and its application for measurement of 1,5-anhydro-D-glucitol.	Tsugawa W, Horiuchi S, Tanaka M, Wake H, Sode K	Appl Biochem Biotechnol	10.1007/BF02786960	1996	*

References

#1437

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3653

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75084

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID2152.1 )

* These data were automatically processed and therefore are not curated

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Leeuwenhoekiella marinoflava DSM 3653 DSM 3653

Leeuwenhoekiella marinoflava DSM 3653

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