Leeuwenhoekiella marinoflava (DSM 3653, ATCC 19326, IAM 14116)

Name: Leeuwenhoekiella marinoflava (DSM 3653, ATCC 19326, IAM 14116)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5602

Type strain

Culture col. no. DSM 3653 ATCC 19326 IAM 14116 NCMB 397 NCIMB 397 8 more

NCBI tax ID(s) 1122159 988

Special Collections DSMZ JCM KCTC

History <- H. Reichenbach <- NCMB <- R. Spencer (Flavobacterium sp.) LMG 1345 <-- NCIMB 397 <-- R. Spencer SW1 (Flavobacterium sp.).

Links

Leeuwenhoekiella marinoflava DSM 3653 is a psychrophilic prokaryote that was isolated from seawater.

psychrophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 2152

LMG 1345,ATCC 19326,DSM 2042,NCMB 397,DSM 3653,IAM 14116,JCM 8517,NCIMB 397,IFO14170,IFO 15939,KCTC 2915,NBRC 14170,NBRC 15939,JCM 31008

@ref 20215

Last LPSN update 2026-02-09 11:19:00

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Leeuwenhoekiella

Species Leeuwenhoekiella marinoflava

Full scientific name Leeuwenhoekiella marinoflava (Reichenbach 1989 ex Colwell et al. 1966) Nedashkovskaya et al. 2005

Synonyms (1)

Cytophaga marinoflava

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	91
125438	96	negative
125439	98.9	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1437	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
1437	CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172)		Medium recipe at MediaDive	Name: CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172) Composition: NaCl 24.7 g/l Agar 15.0 g/l MgSO4 x 7 H2O 6.3 g/l MgCl2 x 6 H2O 4.6 g/l CaCl2 x 2 H2O 1.2 g/l Yeast extract 1.0 g/l Tryptone 1.0 g/l KCl 0.7 g/l NaHCO3 0.2 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
1437	positive	growth	20	psychrophilic
1437	positive	growth	20-25
67770	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.6

Spore formation

@ref	Spore formation	Confidence
125439		98.1

Observation

67770

Observationquinones: MK-6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
1437	seawater	Scotland, Aberdeen	United Kingdom	GBR	Europe
67770	Seawater in the North Sea off Aberdeen	Scotland	United Kingdom	GBR	Europe

Taxonmaps

69479

Global distribution of 16S sequence AB680577 (>99% sequence identity) for Leeuwenhoekiella from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples	1
Plant Samples
Total Samples	2

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1437	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Leeuwenhoekiella marinoflava LMG 1345	complete			2772190910	988	90.41
67770	IMG-taxon 2582581269 annotated assembly for Leeuwenhoekiella marinoflava DSM 3653	scaffold	GCA_900129005	1122159.4	2582581269	1122159	64.76
67770	ASM410403v1 assembly for Leeuwenhoekiella marinoflava LMG 1345	contig	GCA_004104035	988.5		988	61.45

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Cytophaga marinoflava 16S ribosomal RNA gene, partial sequence	AF203475	1445	988
20218	Leeuwenhoekiella marinoflava gene for 16S rRNA, partial sequence, strain: NBRC 14170	AB680577	1453	988
20218	Leeuwenhoekiella marinoflava gene for 16S ribosomal RNA, partial sequence, strain: NCIMB 397	D12668	1257	988
1437	Cytophaga marinoflava 16S ribosomal RNA gene, partial sequence	M58770	1478	988

GC content

@ref	GC-content (mol%)	Method
1437	37.0
67770	37	Buoyant density centrifugation (BD)
67770	38	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Leeuwenhoekiella marinoflava DSM 3653
NCBI: GCA_900129005

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.60	no
125439	gram_stain	BacteriaNetⓘ	negative	98.90	no
125439	motility	BacteriaNetⓘ	no	67.80	no
125439	spore_formation	BacteriaNetⓘ	no	98.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Leeuwenhoekiella marinoflava DSM 3653
PATRIC: 1122159.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.00	no
125438	anaerobic	anaerobicⓘ	no	97.61	no
125438	spore-forming	spore-formingⓘ	no	88.83	no
125438	aerobic	aerobicⓘ	yes	89.40	no
125438	thermophilic	thermophileⓘ	no	98.38	yes
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Glitter-like iridescence within the bacteroidetes especially Cellulophaga spp.: optical properties and correlation with gliding motility.	Kientz B, Ducret A, Luke S, Vukusic P, Mignot T, Rosenfeld E.	PLoS One	10.1371/journal.pone.0052900	2012
Lipids	Genomic study and lipidomic bioassay of Leeuwenhoekiella parthenopeia: A novel rare biosphere marine bacterium that inhibits tumor cell viability.	Gattoni G, de la Haba RR, Martin J, Reyes F, Sanchez-Porro C, Feola A, Zuchegna C, Guerrero-Flores S, Varcamonti M, Ricca E, Selem-Mojica N, Ventosa A, Corral P.	Front Microbiol	10.3389/fmicb.2022.1090197	2022
Phylogeny	Diversity and Hydrocarbon-Degrading Potential of Deep-Sea Microbial Community from the Mid-Atlantic Ridge, South of the Azores (North Atlantic Ocean).	Tomasino MP, Aparicio M, Ribeiro I, Santos F, Caetano M, Almeida CMR, de Fatima Carvalho M, Mucha AP.	Microorganisms	10.3390/microorganisms9112389	2021
Phylogeny	Culture-independent analysis of the soil bacterial assemblage at the Great Salt Plains of Oklahoma.	Caton IR, Schneegurt MA.	J Basic Microbiol	10.1002/jobm.201100175	2012
Enzymology	Purification of a marine bacterial glucose dehydrogenase from Cytophaga marinoflava and its application for measurement of 1,5-anhydro-D-glucitol.	Tsugawa W, Horiuchi S, Tanaka M, Wake H, Sode K	Appl Biochem Biotechnol	10.1007/BF02786960	1996
Phylogeny	Flavimarina pacifica gen. nov., sp. nov., a new marine bacterium of the family Flavobacteriaceae, and emended descriptions of the genus Leeuwenhoekiella, Leeuwenhoekiella aequorea and Leeuwenhoekiella marinoflava.	Nedashkovskaya OI, Kukhlevskiy AD, Zhukova NV, Kim SB.	Antonie Van Leeuwenhoek	10.1007/s10482-014-0210-8	2014
Phylogeny	Reclassification of [Cytophaga] marinoflava Reichenbach 1989 as Leeuwenhoekiella marinoflava gen. nov., comb. nov. and description of Leeuwenhoekiella aequorea sp. nov.	Nedashkovskaya OI, Vancanneyt M, Dawyndt P, Engelbeen K, Vandemeulebroecke K, Cleenwerck I, Hoste B, Mergaert J, Tan TL, Frolova GM, Mikhailov VV, Swings J.	Int J Syst Evol Microbiol	10.1099/ijs.0.63410-0	2005
Phylogeny	Galbibacter mesophilus gen. nov., sp. nov., a novel member of the family Flavobacteriaceae.	Khan ST, Nakagawa Y, Harayama S.	Int J Syst Evol Microbiol	10.1099/ijs.0.64729-0	2007
Phylogeny	Flavimarina flava sp. nov., isolated from Salicornia herbacea.	Cho ES, Cha IT, Park JM, Choi HJ, Lee JH, Roh SW, Cho EA, Kweon MH, Nam YD, Seo MJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002292	2017
Phylogeny	Leeuwenhoekiella polynyae sp. nov., isolated from a polynya in western Antarctica.	Si OJ, Kim SJ, Jung MY, Choi SB, Kim JG, Kim SG, Roh SW, Lee S, Rhee SK	Int J Syst Evol Microbiol	10.1099/ijs.0.000160	2015

References

#1437	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3653
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Leeuwenhoekiella marinoflava (DSM 3653, ATCC 19326, IAM 14116)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900129005

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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