Name: Formosa agariphila M-2Alg 35-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5588

Type strain:

Species: Formosa agariphila

Strain Designation: M-2Alg 35-1

Culture col. no.: DSM 15362, KCTC 12365, LMG 23005, KMM 3901, DSM 19837

Strain history: <- OI Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok, Russia

NCBI tax ID(s): 1347342 (strain), 320324 (species)

SI-ID 99591

LMG 23005, KCTC 12365, DSM 15362, DSM 19837

Section

Formosa agariphila M-2Alg 35-1 is a facultative anaerobe, psychrophilic, Gram-negative bacterium that forms circular colonies and was isolated from green alga Acrosiphonia sonderi.

colony-forming
Gram-negative
motile
rod-shaped
facultative anaerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Formosa*
	Species	**Formosa agariphila**
	Full Scientific Name (LPSN)	Formosa agariphila Nedashkovskaya et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31601]	Gram stain	negative
[Ref.: #27889]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.967

[Ref.: #31601]	Cell length	0.8-1.2 µm
[Ref.: #27889]	Cell length	0.8-1.2 µm

[Ref.: #31601]	Cell width	0.4-0.6 µm
[Ref.: #27889]	Cell width	0.4-0.6 µm

[Ref.: #31601]	Cell shape	rod-shaped

[Ref.: #31601]	Motility	yes
[Ref.: #27889]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #31601]	Flagellum arrangement	gliding
[Ref.: #27889]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #27889]	Colony size	2-4 mm
[Ref.: #27889]	Colony color	yellow
[Ref.: #27889]	Colony shape	circular
[Ref.: #27889]	Cultivation medium used	marine agar

[Ref.: #31601]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5876]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5876]

Culture medium growth

[Ref.: #5876]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5876]

Culture medium composition

expand / minimize

[Ref.: #27889]

Culture medium

Marine agar (MA)

[Ref.: #27889]

Culture medium growth

		Temperature
[Ref.: #5876]	growth	21 °C
[Ref.: #31601]	growth	04-33 °C
[Ref.: #31601]	optimum	21-23 °C
[Ref.: #67771]	growth	21-23 °C

[Ref.: #5876]	Temperature range	psychrophilic
[Ref.: #31601]	Temperature range	psychrophilic
[Ref.: #67771]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #31601]			optimum	7
[Ref.: #31601]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31601]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31601]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

	Salt		Salt conc.
[Ref.: #31601]	NaCl	growth	01-08	%
[Ref.: #31601]	NaCl	optimum	01-08	%
[Ref.: #27889]	NaCl	growth	1-8	%
[Ref.: #27889]	NaCl	optimum	7-8	%

[Ref.: #31601]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #27889]	agar ChEBI	+	degradation
[Ref.: #31601]	arabinose ChEBI	+	carbon source
[Ref.: #27889]	casein	-	hydrolysis
[Ref.: #27889]	cellobiose ChEBI	-	builds acid from
[Ref.: #27889]	cellulose ChEBI	-	hydrolysis
[Ref.: #27889]	citrate ChEBI	-	assimilation
[Ref.: #27889]	crab shell chitin	-	hydrolysis
[Ref.: #27889]	D-galactose ChEBI	+	builds acid from
[Ref.: #27889]	D-glucose ChEBI	+	builds acid from
[Ref.: #27889]	D-mannose ChEBI	+	assimilation
[Ref.: #27889]	dna ChEBI	-	hydrolysis
[Ref.: #27889]	esculin ChEBI	+	degradation
[Ref.: #27889]	galactitol ChEBI	-	builds acid from
[Ref.: #27889]	gelatin ChEBI	+	degradation
[Ref.: #27889]	glycerol ChEBI	-	builds acid from
[Ref.: #27889]	L-arabinose ChEBI	-	builds acid from
[Ref.: #27889]	L-arabinose ChEBI	+	assimilation
[Ref.: #27889]	L-fucose ChEBI	+	builds acid from
[Ref.: #27889]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #27889]	L-sorbose ChEBI	-	builds acid from
[Ref.: #31601]	lactose ChEBI	+	carbon source
[Ref.: #27889]	lactose ChEBI	-	builds acid from
[Ref.: #27889]	lactose ChEBI	+	assimilation
[Ref.: #27889]	maltose ChEBI	+	builds acid from
[Ref.: #27889]	mannitol ChEBI	+	builds acid from
[Ref.: #31601]	mannose ChEBI	+	carbon source
[Ref.: #27889]	melibiose ChEBI	-	builds acid from
[Ref.: #27889]	myo-inositol ChEBI	-	builds acid from
[Ref.: #27889]	myo-inositol ChEBI	-	assimilation
[Ref.: #27889]	nitrate ChEBI	-	reduction
[Ref.: #27889]	raffinose ChEBI	-	builds acid from
[Ref.: #27889]	ribitol ChEBI	-	builds acid from
[Ref.: #27889]	sodium malonate ChEBI	-	assimilation
[Ref.: #27889]	sorbitol ChEBI	-	builds acid from
[Ref.: #27889]	sorbitol ChEBI	-	assimilation
[Ref.: #31601]	sucrose ChEBI	+	carbon source
[Ref.: #27889]	sucrose ChEBI	-	builds acid from
[Ref.: #27889]	sucrose ChEBI	+	assimilation
[Ref.: #27889]	tween 80 ChEBI	-	hydrolysis
[Ref.: #27889]	xylose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #27889]	acetoin ChEBI	no
[Ref.: #27889]	hydrogen sulfide ChEBI	no
[Ref.: #27889]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #31601]	alkaline phosphatase	+	3.1.3.1
[Ref.: #27889]	beta-galactosidase	+	3.2.1.23
[Ref.: #31601]	catalase	+	1.11.1.6
[Ref.: #31601]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5876]	Sample type/isolated from	green alga Acrosiphonia sonderi
[Ref.: #5876]	Host species	Acrosiphonia sonderi
[Ref.: #5876]	Geographic location (country and/or sea, region)	Sea of Japan, Troitsa Bay
[Ref.: #5876]	Continent	Asia

[Ref.: #27889]	Sample type/isolated from	green alga Acrosiphonia sonderi, collected in Troitsa Bay, Gulf of Peter the Great, East Sea
[Ref.: #27889]	Geographic location (country and/or sea, region)	Sea of Japan
[Ref.: #27889]	Country	Russia
[Ref.: #27889]	Country ISO 3 Code	RUS
[Ref.: #27889]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From green alga `Acrosiphonia sonderi`
[Ref.: #67771]	Geographic location (country and/or sea, region)	Troitsa Bay, Gulf of Peter the Great, East Sea(Sea of Japan)
[Ref.: #67771]	Country	Russia
[Ref.: #67771]	Country ISO 3 Code	RUS
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Algae	#Green algae
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY187688 (>99% sequence identity) for Formosa agariphila from Microbeatlas

Aquatic Samples	1284
Soil Samples	53
Animal Samples	84
Plant Samples	20
Total Samples	1441

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5876]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5876]	Formosa agariphila strain KMM 3901 16S ribosomal RNA gene, partial sequence	AY187688	1430	ENA	1347342 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Formosa agariphila KMM 3901 type strain: KMM 3901	GCA_000723205	chromosome	GenBank	1347342 tax ID
[Ref.: #66792]	Formosa agariphila KMM 3901	1347342.6	complete	PATRIC	1347342 tax ID	*
[Ref.: #66792]	Formosa agariphila KMM 3901	2585427664	draft	JGI IMG/M	1347342 tax ID	*

[Ref.: #5876]	GC-content	35 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #31601]	GC-content	35-36 mol%
[Ref.: #5876]	GC-content	33.5 mol%	sequence analysis
[Ref.: #67771]	GC-content	35-36 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Formosa agariphila KMM 3901 type strain: KMM 3901 NCBI: GCA_000723205.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Formosa agariphila KMM 3901 PATRIC: 1347342.6
[Ref.: #69480]	motile	no	84.938	no
[Ref.: #69480]	gram-positive	no	98.254	yes
[Ref.: #69480]	anaerobic	no	99.582	yes
[Ref.: #69480]	halophile	no	61.577	no
[Ref.: #69480]	spore-forming	no	96.73	yes
[Ref.: #69480]	thermophile	no	99.777	yes
[Ref.: #69480]	glucose-util	yes	89.363	no
[Ref.: #69480]	aerobic	yes	91.064	no
[Ref.: #69480]	flagellated	no	93.823	yes
[Ref.: #69480]	glucose-ferment	no	86.676	no

Availability in culture collections External links

[Ref.: #5876]

Culture collection no.

DSM 15362, KCTC 12365, LMG 23005, KMM 3901, DSM 19837

[Ref.: #75070]

SI-ID 99591

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Metabolism	A novel ulvan lyase family with broad-spectrum activity from the ulvan utilisation loci of Formosa agariphila KMM 3901.	Konasani VR, Jin C, Karlsson NG, Albers E	Sci Rep	10.1038/s41598-018-32922-0	2018	*
Enzymology	Biochemical characterization of an ulvan lyase from the marine flavobacterium Formosa agariphila KMM 3901(T).	Reisky L, Stanetty C, Mihovilovic MD, Schweder T, Hehemann JH, Bornscheuer UT	Appl Microbiol Biotechnol	10.1007/s00253-018-9142-y	2018	*
Phylogeny	Formosa arctica sp. nov., isolated from Arctic seawater.	Kwon T, Baek K, Lee K, Kang I, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.056465-0	2013	*
Metabolism	The genome of the alga-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for degradation of algal polysaccharides.	Mann AJ, Hahnke RL, Huang S, Werner J, Xing P, Barbeyron T, Huettel B, Stuber K, Reinhardt R, Harder J, Glockner FO, Amann RI, Teeling H	Appl Environ Microbiol	10.1128/AEM.01937-13	2013	*
Phylogeny	Formosa undariae sp. nov., isolated from a reservoir containing the brown algae Undaria pinnatifida.	Park S, Lee JS, Lee KC, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.053157-0	2013	*
Phylogeny	Formosa spongicola sp. nov., isolated from the marine sponge Hymeniacidon flavia.	Yoon BJ, Oh DC	Int J Syst Evol Microbiol	10.1099/ijs.0.023499-0	2010	*
Phylogeny	Formosa agariphila sp. nov., a budding bacterium of the family Flavobacteriaceae isolated from marine environments, and emended description of the genus Formosa.	Nedashkovskaya OI, Kim SB, Vancanneyt M, Snauwaert C, Lysenko AM, Rohde M, Frolova GM, Zhukova NV, Mikhailov VV, Bae KS, Oh HW, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.63875-0	2006	*
	Two GH16 Endo-1,3-beta-D-Glucanases from Formosa agariphila and F. algae Bacteria Have Complete Different Modes of Laminarin Digestion.	Belik AA, Rasin AB, Kusaykin MI, Ermakova SP	Mol Biotechnol	10.1007/s12033-021-00421-9	2021	*

References

#5876

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15362

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#27889

IJSEM 161 2006 ( DOI 10.1099/ijs.0.63875-0 , PubMed 16403882 )

#31601

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27889 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75070

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID99591.1 )

#27889

IJSEM 161 2006 ( DOI 10.1099/ijs.0.63875-0 , PubMed 16403882 )

* These data were automatically processed and therefore are not curated

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Formosa agariphila KMM 3901 type strain: KMM 3901

Formosa agariphila KMM 3901

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