Name: Flavobacterium gillisiae DSM 22376
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5553

Type strain:

Species: Flavobacterium gillisiae

Culture col. no.: DSM 22376, ACAM 601, LMG 21422

Strain history: <- LMG; LMG 21422 <- J. Bowman, School of Agricultural Sci., Univ. Tasmania, Australia

NCBI tax ID(s): 150146 (species)

SI-ID 86434

LMG 21422, CIP 107449

Section

Flavobacterium gillisiae DSM 22376 is a psychrophilic, Gram-negative bacterium that was isolated from coastal sea ice.

Gram-negative
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium gillisiae**
	Full Scientific Name (LPSN)	Flavobacterium gillisiae McCammon and Bowman 2000

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.993

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16311]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16311]

Culture medium growth

[Ref.: #16311]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16311]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16311]			growth	20 °C

[Ref.: #16311]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16311]	Sample type/isolated from	coastal sea ice
[Ref.: #16311]	Geographic location (country and/or sea, region)	Prydz Bay
[Ref.: #16311]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Ice
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16311]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16311]	Flavobacterium gillisiae strain IC001 16S ribosomal RNA gene, partial sequence	U85889	1474	ENA	150146 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium gillisiae DSM 22376	GCA_900107635	contig	GenBank	150146 tax ID	*
[Ref.: #66792]	Flavobacterium gillisiae strain DSM 22376	150146.5	wgs	PATRIC	150146 tax ID	*
[Ref.: #66792]	Flavobacterium gillisiae DSM 22376	2693429912	draft	JGI IMG/M	150146 tax ID	*

[Ref.: #16311]

GC-content

32.0 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium gillisiae strain DSM 22376 PATRIC: 150146.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium gillisiae strain DSM 22376 PATRIC: 150146.5
[Ref.: #69480]	motile	no	89.951	no
[Ref.: #69480]	gram-positive	no	98.087	no
[Ref.: #69480]	anaerobic	no	99.605	no
[Ref.: #69480]	aerobic	yes	90.722	no
[Ref.: #69480]	halophile	no	94.012	no
[Ref.: #69480]	spore-forming	no	95.801	no
[Ref.: #69480]	thermophile	no	99.521	yes
[Ref.: #69480]	glucose-util	yes	90.521	no
[Ref.: #69480]	flagellated	no	93.563	no
[Ref.: #69480]	glucose-ferment	no	92.746	no

Availability in culture collections External links

[Ref.: #16311]

Culture collection no.

DSM 22376, ACAM 601, LMG 21422

[Ref.: #75035]

SI-ID 86434

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov., and Flavobacterium xanthum sp. nov., nom. rev. and reclassification of [Flavobacterium] salegens as Salegentibacter salegens gen. nov., comb. nov.	McCammon SA, Bowman JP	Int J Syst Evol Microbiol	10.1099/00207713-50-3-1055	2000	*

References

#16311

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22376

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75035

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID86434.1 )

* These data were automatically processed and therefore are not curated

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Flavobacterium gillisiae strain DSM 22376

Flavobacterium gillisiae strain DSM 22376

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