Name: Enterococcus canintestini Devriese S33
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5347

Type strain:

Species: Enterococcus canintestini

Strain Designation: Devriese S33, S33

Culture col. no.: DSM 21207, CCM 7285, LMG 13590, JCM 19616, CCUG 37857, CCUG 51312, CIP 108927

Strain history: CIP <- 2005, CCM <- 2005, LMG <- L. Devriese, Ghent Univ., Ghent, Belgium: strain S33

NCBI tax ID(s): 317010 (species)

SI-ID 10162

LMG 13590, CCUG 37857, CCM 7285, CCUG 51312, DSM 21207, CIP 108927

Special Collections

Other strains from Enterococcus canintestini

Section

When using BacDive for research please cite our paper

Enterococcus canintestini Devriese S33 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from dog faeces.

coccus-shaped
Gram-positive
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Enterococcaceae*
	Genus	*Enterococcus*
	Species	**Enterococcus canintestini**
	Full Scientific Name (LPSN)	Enterococcus canintestini Naser et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31532]	Gram stain	positive
[Ref.: #125438]	Gram stain	positive Confidence in %92.414

[Ref.: #31532]	Cell shape	coccus-shaped

[Ref.: #31532]	Motility	no
[Ref.: #125438]	Motility	no Confidence in %90

[Ref.: #15497]

Incubation period

1-2 days

[Ref.: #31532]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15497]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #15497]

Culture medium growth

[Ref.: #15497]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15497]

Culture medium composition

expand / minimize

[Ref.: #15497]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #15497]

Culture medium growth

[Ref.: #15497]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15497]

Culture medium composition

expand / minimize

[Ref.: #36505]

Culture medium

MEDIUM 29- Brain heart agar

[Ref.: #36505]

Culture medium growth

[Ref.: #36505]

Culture medium composition

expand / minimize

[Ref.: #117133]

Culture medium

CIP Medium 29

[Ref.: #117133]

Culture medium growth

[Ref.: #117133]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15497]	growth	37 °C
[Ref.: #31532]	growth	25-42 °C
[Ref.: #31532]	optimum	37 °C
[Ref.: #36505]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15497]	Oxygen tolerance	microaerophile
[Ref.: #125439]	Oxygen tolerance	microaerophile Confidence in %97.1

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31532]		NaCl		growth	6.5	%
[Ref.: #31532]		NaCl		optimum	6.5	%

[Ref.: #31532]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31532]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	arginine ChEBI	+	hydrolysis	* from API rID32STR
[Ref.: #31532]	cellobiose ChEBI	+	carbon source
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-mannitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-ribose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	D-tagatose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #31532]	esculin ChEBI	+	hydrolysis
[Ref.: #31532]	fructose ChEBI	+	carbon source
[Ref.: #31532]	galactose ChEBI	+	carbon source
[Ref.: #31532]	glucose ChEBI	+	carbon source
[Ref.: #31532]	glycerol ChEBI	+	carbon source
[Ref.: #68381]	glycogen ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	hippurate ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #68381]	L-arabinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #31532]	lactose ChEBI	+	carbon source
[Ref.: #68381]	lactose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #31532]	maltose ChEBI	+	carbon source
[Ref.: #68381]	maltose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #31532]	mannose ChEBI	+	carbon source
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	melibiose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	methyl beta-D-glucopyranoside ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #31532]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68381]	pullulan ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	raffinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #31532]	ribose ChEBI	+	carbon source
[Ref.: #31532]	salicin ChEBI	+	carbon source
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #31532]	sucrose ChEBI	+	carbon source
[Ref.: #68381]	sucrose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #31532]	trehalose ChEBI	+	carbon source
[Ref.: #68381]	trehalose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	urea ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #31532]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68381]		acetoin ChEBI	yes	* from API rID32STR

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68381]		acetoin ChEBI	+	* from API rID32STR

	Enzyme	Enzyme activity	EC number
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	-		* from API rID32STR
[Ref.: #68381]	alkaline phosphatase	-	3.1.3.1	* from API rID32STR
[Ref.: #31532]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68381]	alpha-galactosidase	+	3.2.1.22	* from API rID32STR
[Ref.: #68381]	arginine dihydrolase	+	3.5.3.6	* from API rID32STR
[Ref.: #68381]	beta-galactosidase	-	3.2.1.23	* from API rID32STR
[Ref.: #68381]	beta-glucosidase	+	3.2.1.21	* from API rID32STR
[Ref.: #68381]	beta-glucuronidase	-	3.2.1.31	* from API rID32STR
[Ref.: #68381]	beta-mannosidase	-	3.2.1.25	* from API rID32STR
[Ref.: #68381]	glycyl tryptophan arylamidase	+		* from API rID32STR
[Ref.: #68381]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32STR
[Ref.: #68381]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32STR
[Ref.: #68381]	urease	-	3.5.1.5	* from API rID32STR
	Only first 10 entries are displayed. Click here to see all.

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #15497]	11288	+	+	+	-	+	-	+	-	-	-	+	-	+	-	-	-	+	-	-	-	+	+	-	-	-	+	-	-	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15497]	Sample type/isolated from	dog faeces
[Ref.: #15497]	Country	Belgium
[Ref.: #15497]	Country ISO 3 Code	BEL
[Ref.: #15497]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Fecal sample of healthy dog
[Ref.: #67770]	Country	Belgium
[Ref.: #67770]	Country ISO 3 Code	BEL
[Ref.: #67770]	Continent	Europe

[Ref.: #117133]	Sample type/isolated from	Animal, Dog, feces
[Ref.: #117133]	Country	Belgium
[Ref.: #117133]	Country ISO 3 Code	BEL
[Ref.: #117133]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Canidae (Dog)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15497]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117133]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Enterococcus canintestini JCM 19616 gene for 16S rRNA, partial sequence	LC589220	1495	GenBank ENA	317010 tax ID
[Ref.: #15497]	Enterococcus canintestini 16S rRNA gene, type strain LMG 13590T	AJ888906	1511	GenBank ENA	317010 tax ID
[Ref.: #20218]	Enterococcus canintestini strain LMG 13590 16S-23S ribosomal RNA intergenic spacer, partial sequence	EU089782	231	GenBank ENA	317010 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Enterococcus canintestini DSM 21207	GCA_001885735	contig	GenBank ENA	317010 tax ID
[Ref.: #66792]	Enterococcus canintestini strain DSM 21207	317010.5	wgs	PATRIC	317010 tax ID	*

[Ref.: #15497]	GC-content	36-37 mol%
[Ref.: #31532]	GC-content	36.5 mol%
[Ref.: #67770]	GC-content	36-37 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Enterococcus canintestini strain DSM 21207 PATRIC: 317010.5
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	92.414	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	89.168	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	81.482	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.477	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	95.813	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	90	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Enterococcus canintestini DSM 21207 NCBI: GCA_001885735
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	53.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	63.1
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	70.3
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	microaerophile	97.1

Availability in culture collections External links

[Ref.: #15497]

Culture collection no.

DSM 21207, CCM 7285, LMG 13590, JCM 19616, CCUG 37857, CCUG 51312, CIP 108927

[Ref.: #74836]

SI-ID 10162

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Enterococcus saigonensis sp. nov., isolated from retail chicken meat and liver.	Harada T, Dang VC, Nguyen DP, Nguyen TAD, Sakamoto M, Ohkuma M, Motooka D, Nakamura S, Uchida K, Jinnai M, Yonogi S, Kawahara R, Kanki M, Kawai T, Kumeda Y, Yamamoto Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001264	2016	*
Phylogeny	Enterococcus canintestini sp. nov., from faecal samples of healthy dogs.	Naser SM, Vancanneyt M, De Graef E, Devriese LA, Snauwaert C, Lefebvre K, Hoste B, Svec P, Decostere A, Haesebrouck F, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.63752-0	2005	*

References

#15497

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21207

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31532

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27826 (see below)

#36505 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68381

Automatically annotated from API rID32STR .

#74836

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID10162.1 )

#117133 Collection of Institut Pasteur ; Curators of the CIP; CIP 108927

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#27826

IJSEM 2177 2005 ( DOI 10.1099/ijs.0.63752-0 , PubMed 16166728 )

* These data were automatically processed and therefore are not curated

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Enterococcus canintestini strain DSM 21207

Enterococcus canintestini DSM 21207

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