Name: Yersinia ruckeri 2396-61
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5223

Type strain:

Species: Yersinia ruckeri

Strain Designation: 2396-61

Culture col. no.: DSM 18506, ATCC 29473, CCM 6093, CCUG 14190, CIP 82.80, JCM 2429, NCIMB 2194, NCTC 12986, CECT 4319, JCM 15110, CDC 2396-61

Strain history: CIP <- 1982, H.H. Mollaret, Inst. Pasteur, Paris, France <- CDC: strain 2396-61

NCBI tax ID(s): 527005 (strain), 29486 (species)

SI-ID 39549

ATCC 29473, NCIMB 2194, CCUG 14190, CCM 6093, JCM 2429, NCMB 2194, NCTC 12986, CECT 4319, CCRC 14125, LMG21879, LMG 21870, BCRC 14125, HAMBI 1298, KCTC 12265, DSM 18506, JCM 15110, CIP 82.80

Special Collections

Other strains from Yersinia ruckeri

Section

Yersinia ruckeri 2396-61 is a Gram-negative animal pathogen that was isolated from rainbowtrout with red-mouth disease.

Gram-negative
animal pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Yersiniaceae*
	Genus	*Yersinia*
	Species	**Yersinia ruckeri**
	Full Scientific Name (LPSN)	Yersinia ruckeri Ewing et al. 1978 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #122299]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.5

[Ref.: #122299]	Cell shape	rod-shaped

[Ref.: #122299]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7565]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #7565]

Culture medium growth

[Ref.: #7565]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7565]

Culture medium composition

expand / minimize

[Ref.: #41652]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41652]

Culture medium growth

[Ref.: #41652]

Culture medium composition

expand / minimize

[Ref.: #122299]

Culture medium

CIP Medium 3

[Ref.: #122299]

Culture medium growth

[Ref.: #122299]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122299]

Culture medium

CIP Medium 72

[Ref.: #122299]

Culture medium growth

[Ref.: #122299]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7565]	growth	30 °C
[Ref.: #41652]	growth	30 °C
[Ref.: #46043]	growth	26 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %91.507

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #7565]	17982	+	-	+	+	-	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #7565]	17747	+	+	+	+	-	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #7565]	17746	+	+	+	+	-	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	acetoin degradation	100	3 of 3
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	100	5 of 5
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	NAD metabolism	94.44	17 of 18
[Ref.: #66794]	photosynthesis	92.86	13 of 14
[Ref.: #66794]	vitamin B6 metabolism	90.91	10 of 11
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	chorismate metabolism	77.78	7 of 9
[Ref.: #66794]	purine metabolism	77.66	73 of 94
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	histidine metabolism	72.41	21 of 29
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	oxidative phosphorylation	63.74	58 of 91
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	methionine metabolism	57.69	15 of 26
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	degradation of pentoses	53.57	15 of 28
[Ref.: #66794]	tryptophan metabolism	52.63	20 of 38
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	lysine metabolism	50	21 of 42
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	degradation of sugar alcohols	50	8 of 16
[Ref.: #66794]	degradation of sugar acids	48	12 of 25
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	3-phenylpropionate degradation	33.33	5 of 15
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	androgen and estrogen metabolism	31.25	5 of 16
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	phenol degradation	30	6 of 20
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	d-xylose degradation	27.27	3 of 11
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7565]	Sample type/isolated from	rainbowtrout with red-mouth disease
[Ref.: #7565]	Geographic location (country and/or sea, region)	Idaho
[Ref.: #7565]	Country	USA
[Ref.: #7565]	Country ISO 3 Code	USA
[Ref.: #7565]	Continent	North America

[Ref.: #46043]	Sample type/isolated from	Rainbow trout with red mouth disease
[Ref.: #46043]	Country	USA
[Ref.: #46043]	Country ISO 3 Code	USA
[Ref.: #46043]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Rainbow trout with red mouth disease

[Ref.: #122299]	Sample type/isolated from	Rainbow trout, red mouth disease
[Ref.: #122299]	Geographic location (country and/or sea, region)	Idaho
[Ref.: #122299]	Country	United States of America
[Ref.: #122299]	Country ISO 3 Code	USA
[Ref.: #122299]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Fishes	#Salmonidae
#Host Body-Site	#Oral cavity and airways	#Mouth

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7565]	Pathogenicity (animal)	yes
[Ref.: #7565]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122299]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7565]	Yersinia ruckeri ATCC 29473 genomic scaffold scaffold1, whole genome shotgun sequence	KN150747	3672847	GenBank ENA	527005 tax ID
[Ref.: #7565]	Yersinia ruckeri 16S ribosomal RNA gene, partial sequence	AF366385	1461	GenBank ENA	29486 tax ID
[Ref.: #124043]	Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.	FJ518716	410	GenBank ENA	29486 tax ID	*
[Ref.: #124043]	Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.	FJ518717	410	GenBank ENA	29486 tax ID	*
[Ref.: #124043]	Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.	FJ518721	410	GenBank ENA	630 tax ID	*
[Ref.: #124043]	Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.	FJ518722	410	GenBank ENA	630 tax ID	*
[Ref.: #124043]	Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.	FJ518723	410	GenBank ENA	630 tax ID	*
[Ref.: #124043]	Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.	FJ518724	410	GenBank ENA	630 tax ID	*
[Ref.: #124043]	Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.	FJ518725	410	GenBank ENA	630 tax ID	*
[Ref.: #124043]	Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.	FJ518726	410	GenBank ENA	632 tax ID	*
[Ref.: #124043]	Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.	FJ518727	410	GenBank ENA	632 tax ID	*
[Ref.: #124043]	Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.	FJ518776	311	GenBank ENA	29486 tax ID	*
[Ref.: #124043]	Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.	FJ518777	311	GenBank ENA	29486 tax ID	*
[Ref.: #20218]	Yersinia ruckeri strain ATCC 29473 16S ribosomal RNA gene, partial sequence	FJ518718	410	GenBank ENA	29486 tax ID	*
[Ref.: #20218]	Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence	FJ518778	311	GenBank ENA	527005 tax ID	*
[Ref.: #20218]	Yersinia ruckeri (ATCC 29473) partial 16S ribosomal RNA gene	X75275	1485	GenBank ENA	29486 tax ID	*
[Ref.: #20218]	Yersinia ruckeri strain CCUG 14190 16S ribosomal RNA gene, partial sequence	EF179132	1461	GenBank ENA	29486 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Yersinia ruckeri ATCC 29473	GCA_000173755	contig	GenBank ENA	527005 tax ID
[Ref.: #67770]	Yersinia ruckeri ATCC 29473	GCA_000754815	scaffold	GenBank ENA	527005 tax ID
[Ref.: #67770]	Yersinia ruckeri NCTC12986	GCA_900460715	contig	GenBank ENA	29486 tax ID
[Ref.: #66792]	Yersinia ruckeri CSF007-82	29486.12	wgs	PATRIC	29486 tax ID	*
[Ref.: #66792]	Yersinia ruckeri ATCC 29473	2609460118	draft	JGI IMG/M	527005 tax ID	*
[Ref.: #66792]	Yersinia ruckeri NCTC 12986	2826154096	draft	JGI IMG/M	29486 tax ID	*

[Ref.: #67770]

GC-content

46.5-48.5 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Yersinia ruckeri ATCC 29473 PATRIC: 527005.28
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.336	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.507	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	67.59	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.237	no

Availability in culture collections External links

[Ref.: #7565]

Culture collection no.

DSM 18506, ATCC 29473, CCM 6093, CCUG 14190, CIP 82.80, JCM 2429, NCIMB 2194, NCTC 12986, CECT 4319, JCM 15110, CDC 2396-61

[Ref.: #74715]

SI-ID 39549

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Genetics	Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes.	Andreopoulos WB, Geller AM, Lucke M, Balewski J, Clum A, Ivanova NN, Levy A	Nucleic Acids Res	10.1093/nar/gkab1115	2022	*
Phylogeny	pYR4 From a Norwegian Isolate of Yersinia ruckeri Is a Putative Virulence Plasmid Encoding Both a Type IV Pilus and a Type IV Secretion System.	Wrobel A, Ottoni C, Leo JC, Linke D	Front Cell Infect Microbiol	10.3389/fcimb.2018.00373	2018	*
Genetics	Comparative genome analysis reveals important genetic differences among serotype O1 and serotype O2 strains of Y. ruckeri and provides insights into host adaptation and virulence.	Cascales D, Guijarro JA, Garcia-Torrico AI, Mendez J	Microbiologyopen	10.1002/mbo3.460	2017	*
Enzymology	Fatty acid composition of Yersinia ruckeri isolates from aquaculture ponds in northwestern Germany.	Huang Y, Ryll M, Walker C, Jung A, Runge M, Steinhagen D	Berl Munch Tierarztl Wochenschr		2014	*
	Effect of autochthonous lactobacilli on immunologically important molecules of rainbow trout after bacterial infection studied on intestinal primoculture.	Cingelova Maruscakova I, Schusterova P, Popelka P, Gancarcikova S, Csank T, Feckaninova A, Ratvaj M, Mudronova D	Fish Shellfish Immunol	10.1016/j.fsi.2021.10.021	2021	*
	Invasion and replication of Yersinia ruckeri in fish cell cultures.	Menanteau-Ledouble S, Lawrence ML, El-Matbouli M	BMC Vet Res	10.1186/s12917-018-1408-1	2018	*

References

#7565

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18506

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41652 ; Curators of the CIP;
#46043 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 14190

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#74715

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39549.1 )

#122299 Collection of Institut Pasteur ; Curators of the CIP; CIP 82.80

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Yersinia ruckeri in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Yersinia ruckeri ATCC 29473

Change proposal

Change proposal