Yersinia aldovae (DSM 18303, ATCC 35236, CCUG 18770)

Name: Yersinia aldovae (DSM 18303, ATCC 35236, CCUG 18770)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5221

Type strain

Culture col. no. DSM 18303 ATCC 35236 CCUG 18770 CDC 669-83 CNY 6005 3 more

NCBI tax ID(s) 527002 29483

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- CCUG <- ATCC <- G. P. Huntley-Carter <- H. Bercovier <- E. Aldovà, Czecheslovakia JCM <-- Y. Kosako 85558 <-- R. Sakazaki 85020 <-- CDC 669-83. CIP <- 1988, ATCC <- G. Huntley-Carter <- H.H. Mollaret, Inst. Pasteur, Paris, France: strain CNY 6005 <- E. Aldova

Links

Yersinia aldovae DSM 18303 is an aerobe, Gram-negative, motile bacterium that was isolated from drinking water.

Gram-negative motile oval-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 10847

LMG 7913,ATCC 35236,CIP 103162,JCM 5892,CCUG 18770,CECT 4314,DSM 18303

@ref 20215

Last LPSN update 2026-05-29 08:26:07

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Yersiniaceae

Genus Yersinia

Species Yersinia aldovae

Full scientific name Yersinia aldovae Bercovier et al. 1984

BacDive ID	Other strains from **Yersinia aldovae** (7)	Type strain
135445	Y. aldovae CIP 104234, CNY 7618
135446	Y. aldovae CIP 104235, CNY 7096
135451	Y. aldovae CIP 104236, CNY 7330
139038	Y. aldovae CIP 104233, CNY 8616
143372	Y. aldovae CCUG 18771, ATCC 35237
144776	Y. aldovae CCUG 26532
144866	Y. aldovae CCUG 26915

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116210	negative	oval-shaped
125439	negative		97.49
125438	negative		99.25

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7490	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
34373	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
116210	CIP Medium 72	Medium recipe at CIP
116210	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7490	positive	growth	30
34373	positive	growth	30
46886	positive	growth	30
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
46886	aerobe
116210	facultative anaerobe
125439	obligate aerobe	96.072

Spore formation

@ref	Spore formation	Confidence
125439		99.848

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	+	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
116210	17632 ChEBI	nitrate	+	reduction
116210	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116210	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
116210	catalase	+	1.11.1.6
116210	oxidase	-
116210	urease	+	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

46886

Fatty acid	Percentage	ECL
C16:1 ω7c	40.5	15.819
C16:0	27.3	16
C12:0	8.1	12
C18:1 ω7c /12t/9t	6.3	17.824
C14:0 3OH/C16:1 ISO I	6.3	15.485
C15:0	4.5	15
C12:0 ALDE ?	1.7	10.915
C14:0	1.6	14
C17:0	1.5	17
C17:0 CYCLO	1.4	16.888
unknown 13.961	0.8	13.961

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116210	not determinedn.d.	+/-	-	-	+	+	+	-	-	-	+	+	+	+	-	+	-	+/-	+	+	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+/-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
7490	drinking water	Czechoslovakia		Europe
46886	Drinking water	Czechoslovakia		Europe
67770	Drinking water
116210	Environment, Drinking water	Czech Republic	CZE	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7490	1	Risk group (German classification) According to TRBA 466
116210	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM17373v1 assembly for Yersinia aldovae ATCC 35236	contig	GCA_000173735	527002.3	645058792	527002	35.15

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Yersinia aldovae 16S ribosomal RNA gene, partial sequence	AF366376	1461	29483
20218	Yersinia aldovae strain CCUG 18770 16S ribosomal RNA gene, partial sequence	EF179125	1461	29483
20218	Yersinia aldovae ATCC 35236 16S ribosomal RNA gene, partial sequence	FJ518719	410	527002
67770	Yersinia aldovae (ATCC 35236) partial 16S ribosomal RNA gene	X75277	1486	29483
124043	Yersinia rochesterensis strain EPLC-04 16S ribosomal RNA gene, partial sequence.	KJ606903	1467	29483

GC content

@ref	GC-content (mol%)	Method
67770	48	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM17373v1 assembly for Yersinia aldovae ATCC 35236
BV-BRC: 527002.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.07	no
125439	gram_stain	BacteriaNetⓘ	negative	97.49	no
125439	motility	BacteriaNetⓘ	yes	72.16	no
125439	spore_formation	BacteriaNetⓘ	no	99.85	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Yersinia aldovae ATCC 35236
PATRIC: 527002.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.25	no
125438	anaerobic	anaerobicⓘ	no	96.50	yes
125438	spore-forming	spore-formingⓘ	no	88.71	no
125438	aerobic	aerobicⓘ	no	63.86	no
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	yes	76.25	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Multispectral LIF-Based Standoff Detection System for the Classification of CBE Hazards by Spectral and Temporal Features.	Fellner L, Kraus M, Gebert F, Walter A, Duschek F.	Sensors (Basel)	10.3390/s20092524	2020
	A bacteriophage cocktail targeting Yersinia pestis provides strong post-exposure protection in a rat pneumonic plague model.	Kilgore PB, Sha J, Hendrix EK, Neil BH, Lawrence WS, Peel JE, Hittle L, Woolston J, Sulakvelidze A, Schwartz JA, Chopra AK.	Microbiol Spectr	10.1128/spectrum.00942-24	2024
Enzymology	Genetic engineering of complex feed enzymes into barley seed for direct utilization in animal feedstuff.	Peng RH, Zhang WH, Wang Y, Deng YD, Wang B, Gao JJ, Li ZJ, Wang LJ, Fu XY, Xu J, Han HJ, Tian YS, Yao QH.	Plant Biotechnol J	10.1111/pbi.13972	2023
Pathogenicity	Mutasynthetic Production and Antimicrobial Characterization of Darobactin Analogs.	Bohringer N, Green R, Liu Y, Mettal U, Marner M, Modaresi SM, Jakob RP, Wuisan ZG, Maier T, Iinishi A, Hiller S, Lewis K, Schaberle TF.	Microbiol Spectr	10.1128/spectrum.01535-21	2021
	Scaffolding and validation of bacterial genome assemblies using optical restriction maps.	Nagarajan N, Read TD, Pop M.	Bioinformatics	10.1093/bioinformatics/btn102	2008
Enzymology	Loop-mediated isothermal amplification as an emerging technology for detection of Yersinia ruckeri the causative agent of enteric red mouth disease in fish.	Saleh M, Soliman H, El-Matbouli M.	BMC Vet Res	10.1186/1746-6148-4-31	2008
Pathogenicity	AIP56: a novel bacterial apoptogenic toxin.	Silva MT, Dos Santos NM, do Vale A.	Toxins (Basel)	10.3390/toxins2040905	2010
Enzymology	Comprehensive Laboratory Evaluation of a Lateral Flow Assay for the Detection of Yersinia pestis.	Prentice KW, DePalma L, Ramage JG, Sarwar J, Parameswaran N, Petersen J, Yockey B, Young J, Joshi M, Thirunavvukarasu N, Singh A, Chapman C, Avila JR, Pillai CA, Manickam G, Sharma SK, Morse SA, Venkateswaran KV, Anderson K, Hodge DR, Pillai SP.	Health Secur	10.1089/hs.2019.0094	2019
	Identification of putative adhesins of Actinobacillus suis and their homologues in other members of the family Pasteurellaceae.	Bujold AR, MacInnes JI.	BMC Res Notes	10.1186/s13104-015-1659-x	2015
Enzymology	Molecular method for detection of total coliforms in drinking water samples.	Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ.	Appl Environ Microbiol	10.1128/aem.00546-14	2014
Enzymology	Comparison of hand-held test kits, immunofluorescence microscopy, enzyme-linked immunosorbent assay, and flow cytometric analysis for rapid presumptive identification of Yersinia pestis.	Tomaso H, Thullier P, Seibold E, Guglielmo V, Buckendahl A, Rahalison L, Neubauer H, Scholz HC, Splettstoesser WD.	J Clin Microbiol	10.1128/jcm.00458-07	2007
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
Phylogeny	Rapid differentiation of Francisella species and subspecies by fluorescent in situ hybridization targeting the 23S rRNA.	Splettstoesser WD, Seibold E, Zeman E, Trebesius K, Podbielski A.	BMC Microbiol	10.1186/1471-2180-10-72	2010
Metabolism	Identification of YsrT and evidence that YsrRST constitute a unique phosphorelay system in Yersinia enterocolitica.	Walker KA, Obrist MW, Mildiner-Earley S, Miller VL.	J Bacteriol	10.1128/jb.00745-10	2010

References

#7490	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18303
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34373	; Curators of the CIP;
#46886	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 18770
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#116210	Collection of Institut Pasteur ; Curators of the CIP; CIP 103162
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Yersinia aldovae (DSM 18303, ATCC 35236, CCUG 18770)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000173735

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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