Name: Xenorhabdus cabanillasii USTX62
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5201

Type strain:

Species: Xenorhabdus cabanillasii

Strain Designation: USTX62

Culture col. no.: DSM 17905, CIP 109066

Strain history: CIP <- 2005, N. Boemare, INRA, Montpellier Univ., Montpellier, France: strain USTX62

NCBI tax ID(s): 351673 (species)

SI-ID 297365

CIP 109066, DSM 17905

Section

Xenorhabdus cabanillasii USTX62 is a facultative anaerobe, mesophilic, motile animal pathogen that was isolated from Steinernema riobrave.

motile
animal pathogen
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Morganellaceae*
	Genus	*Xenorhabdus*
	Species	**Xenorhabdus cabanillasii**
	Full Scientific Name (LPSN)	Xenorhabdus cabanillasii Tailliez et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #117085]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.941

[Ref.: #117085]	Cell shape	rod-shaped

[Ref.: #117085]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %97.742

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7236]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #7236]

Culture medium growth

[Ref.: #7236]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7236]

Culture medium composition

expand / minimize

[Ref.: #117085]

Culture medium

CIP Medium 72

[Ref.: #117085]

Culture medium growth

[Ref.: #117085]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #7236]			growth	30 °C

[Ref.: #7236]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #117085]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.977

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #117085]		nitrate ChEBI	-	reduction
[Ref.: #117085]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #117085]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #117085]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #117085]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #117085]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #117085]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #117085]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #117085]	tryptophan deaminase	-
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #117085]	11646	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7236]	Sample type/isolated from	Steinernema riobrave
[Ref.: #7236]	Host species	Steinernema riobrave
[Ref.: #7236]	Geographic location (country and/or sea, region)	Texas
[Ref.: #7236]	Country	USA
[Ref.: #7236]	Country ISO 3 Code	USA
[Ref.: #7236]	Continent	North America

[Ref.: #117085]	Sample type/isolated from	Animal, Nematode Steinernema riobrave SE62
[Ref.: #117085]	Geographic location (country and/or sea, region)	Texas
[Ref.: #117085]	Country	United States of America
[Ref.: #117085]	Country ISO 3 Code	USA
[Ref.: #117085]	Continent	North America
[Ref.: #117085]	Isolation date	1999
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Nematoda

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7236]	Pathogenicity (animal)	yes
[Ref.: #7236]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117085]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7236]	Xenorhabdus cabanillasii strain USTX62 16S ribosomal RNA gene, partial sequence	AY521244	1485	ENA	351673 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xenorhabdus cabanillasii DSM 17905	GCA_003386665	contig	GenBank	351673 tax ID	*
[Ref.: #66792]	Xenorhabdus cabanillasii strain DSM 17905	351673.4	wgs	PATRIC	351673 tax ID	*
[Ref.: #66792]	Xenorhabdus cabanillasii DSM 17905	2778260932	draft	JGI IMG/M	351673 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Xenorhabdus cabanillasii strain DSM 17905 PATRIC: 351673.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xenorhabdus cabanillasii strain DSM 17905 PATRIC: 351673.4
[Ref.: #69480]	gram-positive	no	97.79	no
[Ref.: #69480]	anaerobic	no	97.664	no
[Ref.: #69480]	halophile	no	88.843	no
[Ref.: #69480]	spore-forming	no	94.627	no
[Ref.: #69480]	glucose-util	yes	90.117	no
[Ref.: #69480]	motile	yes	86.151	no
[Ref.: #69480]	flagellated	no	50	no
[Ref.: #69480]	thermophile	no	97.833	yes
[Ref.: #69480]	aerobic	yes	79.803	no
[Ref.: #69480]	glucose-ferment	yes	80.823	no

Availability in culture collections External links

[Ref.: #7236]

Culture collection no.

DSM 17905, CIP 109066

[Ref.: #74693]

SI-ID 297365

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	New insight into diversity in the genus Xenorhabdus, including the description of ten novel species.	Tailliez P, Pages S, Ginibre N, Boemare N	Int J Syst Evol Microbiol	10.1099/ijs.0.64287-0	2006	*

References

#7236

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17905

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74693

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297365.1 )

#117085 Collection of Institut Pasteur ; Curators of the CIP; CIP 109066
* These data were automatically processed and therefore are not curated

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Xenorhabdus cabanillasii strain DSM 17905

Xenorhabdus cabanillasii strain DSM 17905

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