Name: Sulfurihydrogenibium subterraneum DSM 15120
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 518

Type strain:

Species: Sulfurihydrogenibium subterraneum

Culture col. no.: DSM 15120, ATCC BAA-562, JCM 11477, HGMK 1

Strain history: K. Takai HGMK1.

NCBI tax ID(s): 1123325 (strain), 171121 (species)

SI-ID 100986

ATCC BAA-562, DSM 15120, JCM 11477

Special Collections

DSMZ
JCM

Section

Sulfurihydrogenibium subterraneum DSM 15120 is a thermophilic, Gram-negative bacterium that was isolated from a subsurface hot aquifer water.

Gram-negative
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Aquificota*
	Class	*Aquificia*
	Order	*Aquificales*
	Family	*Hydrogenothermaceae*
	Genus	*Sulfurihydrogenibium*
	Species	**Sulfurihydrogenibium subterraneum**
	Full Scientific Name (LPSN)	Sulfurihydrogenibium subterraneum Takai et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %95.028

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5619]

Culture medium

THERMOPHILIC HYDROGEN BACTERIA MEDIUM (DSMZ Medium 533)

[Ref.: #5619]

Culture medium growth

[Ref.: #5619]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #5619]			growth	60 °C
[Ref.: #67770]			growth	62 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %92.777
[Ref.: #69481]	Ability of spore formation	no Confidence in %99

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5619]	Sample type/isolated from	a subsurface hot aquifer water
[Ref.: #5619]	Geographic location (country and/or sea, region)	Japanese Gold mine
[Ref.: #5619]	Country	Japan
[Ref.: #5619]	Country ISO 3 Code	JPN
[Ref.: #5619]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Subsurface hot aquifer water in the Hishikari gold mine
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kagoshima
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Groundwater
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB071324 (>99% sequence identity) for Sulfurihydrogenibium subterraneum from Microbeatlas

Aquatic Samples	83
Soil Samples	1
Animal Samples	2
Plant Samples
Total Samples	86

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5619]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Aquificales str. HGM-K1 gene for 16S rRNA, partial sequence	AB071324	1429	GenBank ENA	171121 tax ID	*
[Ref.: #20218]	Sulfurihydrogenibium subterraneum 16S-23S rRNA intergenic spacer containing tRNA-Ile and tRNA-Ala genes, type strain DSM 15120T	AM259518	334	GenBank ENA	171121 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sulfurihydrogenibium subterraneum DSM 15120	GCA_000619805	scaffold	GenBank ENA	1123325 tax ID
[Ref.: #66792]	Sulfurihydrogenibium subterraneum DSM 15120	1123325.3	wgs	PATRIC	1123325 tax ID	*
[Ref.: #66792]	Sulfurihydrogenibium subterraneum DSM 15120	2558860995	draft	JGI IMG/M	1123325 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sulfurihydrogenibium subterraneum DSM 15120 DSM 15120 NCBI: GCA_000619805.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sulfurihydrogenibium subterraneum DSM 15120 PATRIC: 1123325.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.028	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	57.253	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.777	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	86.16	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	66.357	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	50.876	no

Availability in culture collections External links

[Ref.: #5619]

Culture collection no.

DSM 15120, ATCC BAA-562, JCM 11477, HGMK 1

[Ref.: #70196]

SI-ID 100986

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfurihydrogenibium subterraneum gen. nov., sp. nov., from a subsurface hot aquifer.	Takai K, Kobayashi H, Nealson KH, Horikoshi K	Int J Syst Evol Microbiol	10.1099/ijs.0.02506-0	2003	*

References

#5619

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15120

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70196

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100986.1 )

* These data were automatically processed and therefore are not curated

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Sulfurihydrogenibium subterraneum DSM 15120 DSM 15120

Sulfurihydrogenibium subterraneum DSM 15120

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