Name: Pantoea stewartii A14
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5001

Type strain:

Species: Pantoea stewartii

Strain Designation: A14, ZO10, 3152, SS11

Culture col. no.: DSM 30176, ATCC 8199, CCUG 26359, LMG 2715, NCPPB 2295

Strain history: <- ATCC <- W.H. Burkholder (Xanthomonas stewartii, SS11) <- E.W. Lindstrom, 3152

NCBI tax ID(s): 66269 (species)

SI-ID 13665

LMG 2715, ATCC 8199, DSM 30176, ICMP 257, IMET 11187, NCPPB 2295, PDDCC 257, CIP 104005, CCM 4477, KCTC 2570, CCUG 26359, BCRC 13195, CCRC 13195, BCRC 17205, CCRC 17205, ICMP 723, CFBP 2349, ICMP 697, KACC 10085, NBIMCC 2323, CFBP 3167, NRRL B-794, CFBP 3517

Special Collections

DSMZ
CCUG

Other strains from Pantoea stewartii

Section

Pantoea stewartii A14 is a Gram-negative plant pathogen that was isolated from Zea mays var. rugosa.

Gram-negative
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Erwiniaceae*
	Genus	*Pantoea*
	Species	**Pantoea stewartii**
	Full Scientific Name (LPSN)	Pantoea stewartii (Smith 1898) Mergaert et al. 1993

	Synonym	"Pseudomonas* stewarti"*
	Synonym	Erwinia stewartii

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9181]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #9181]

Culture medium growth

[Ref.: #9181]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9181]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9181]			growth	26 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68368]		hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]		indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Indole test
[Ref.: #68368]		indole ChEBI	-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #9181]	17641	+	-	-	-	-	-	-	-	-	+	-	+	+	-	-	-	+	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9181]	16629	+	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	+	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #48418]	Sample type/isolated from	Zea mays var. rugosa
[Ref.: #48418]	Country	USA
[Ref.: #48418]	Country ISO 3 Code	USA
[Ref.: #48418]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Z96080 (>99% sequence identity) for Pantoea from Microbeatlas

Aquatic Samples	247
Soil Samples	83
Animal Samples	1992
Plant Samples	394
Total Samples	2716

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9181]	Pathogenicity (plant)	yes
[Ref.: #9181]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Erwinia stewartii 16S ribosomal RNA gene, partial sequence	U80208	1456	GenBank ENA	66271 tax ID	*
[Ref.: #20218]	Pantoea stewartii subsp. indologenes strain CFBP 3517 16S ribosomal RNA gene, partial sequence	FJ611852	1363	GenBank ENA	66270 tax ID	*
[Ref.: #20218]	Pantoea stewartii LMG 2715 16S ribosomal RNA	Z96080	1497	GenBank ENA	66269 tax ID	*
[Ref.: #124043]	Pantoea stewartii subsp. stewartii gene for 16S ribosomal RNA, partial sequence, strain: ATCC 8199.	AB907781	1491	GenBank ENA	66271 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pantoea stewartii subsp. stewartii CCUG 26359	GCA_008801695	contig	GenBank ENA	66271 tax ID	*
[Ref.: #66792]	Pantoea stewartii subsp. stewartii strain CCUG 26359	66271.14	wgs	PATRIC	66271 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pantoea stewartii subsp. stewartii strain CCUG 26359 PATRIC: 66271.14
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	99.941	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.458	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	65.875	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	100	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	72.756	no

Availability in culture collections External links

[Ref.: #9181]

Culture collection no.

DSM 30176, ATCC 8199, CCUG 26359, LMG 2715, NCPPB 2295

[Ref.: #74496]

SI-ID 13665

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation and Characterization of Novel Pantoea stewartii subsp. indologenes Strains Exhibiting Center Rot in Onion.	Stumpf S, Kvitko B, Gitaitis R, Dutta B	Plant Dis	10.1094/PDIS-08-17-1321-RE	2018	*
	Pan-Genome of Novel Pantoea stewartii subsp. indologenes Reveals Genes Involved in Onion Pathogenicity and Evidence of Lateral Gene Transfer.	Agarwal G, Gitaitis RD, Dutta B	Microorganisms	10.3390/microorganisms9081761	2021	*
	First Report of Pantoea stewartii subsp. stewartii Causing Bacterial Leaf Wilt of Sugarcane in China.	Cui D, Huang MT, Hu CY, Su JB, Lin LH, Javed T, Deng ZH, Gao SJ	Plant Dis	10.1094/PDIS-09-20-2015-PDN	2020	*
	First Report of Stewart's Wilt of Maize in Argentina Caused by Pantoea stewartii.	Orio AGA, Brucher E, Plazas MC, Sayago P, Guerra F, De Rossi R, Ducasse DA, Guerra GD	Plant Dis	10.1094/PDIS-07-12-0668-PDN	2012	*

References

#9181

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30176

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#48418 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 26359

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#74496

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13665.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Pantoea stewartii subsp. stewartii strain CCUG 26359

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