Name: Pantoea agglomerans 19
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4993

Type strain:

Species: Pantoea agglomerans

Strain Designation: 19, 4834

Culture col. no.: DSM 4609, ATCC 33243, CIP 82.100, DSM 3785, NCPPB 2971, CCTM 3231, CCUG 14802, NCIMB 12126

Strain history: CIP <- 1982, NCPPB, Erwinia herbicola <- 1977, PDDCC <- D.W. Dye: strain ZP 11, Xanthomonas trifolii <- WAF Hagborg: strain 4834 <- E.B. Roslycky: strain 19

NCBI tax ID(s): 549 (species)

SI-ID 3754

LMG 2565, ATCC 33243, CCUG 14802, DSM 4609, ICMP 272, NCIB 12126, NCPPB 2971, PDDCC 272, NCIMB 12126, CIP 82.100, KCTC 2479, KACC 10055, CFBP 4740, CFBP 4898, VTT E-89373, VTT E-981098

Other strains from Pantoea agglomerans

P. agglomerans Graham Price, Brice, DSM 3493, ... (type strain)
P. agglomerans A 111, DSM 1619
P. agglomerans 7, DSM 8570
P. agglomerans WS 10180, DSM 30074
P. agglomerans 11-W-3-2, DSM 30851
P. agglomerans DSM 30072, ATCC 14537, IAM 1555
P. agglomerans CIP 102282
P. agglomerans CIP 55.49
P. agglomerans CIP A181
P. agglomerans CIP 105196, CFBP 11141
P. agglomerans CCUG 38821
P. agglomerans CCUG 43472
P. agglomerans CCUG 44459
P. agglomerans CCUG 56817
P. agglomerans CCUG 58262
P. agglomerans CCUG 67569
P. agglomerans IMI 347416
P. agglomerans IMI 347417
P. agglomerans IMI 347419
P. agglomerans IMI 347420
P. agglomerans IMI 347422
P. agglomerans IMI 347423
P. agglomerans JCM 20143, ATCC 12287, IAM 1309
P. agglomerans JCM 7000

Section

Pantoea agglomerans 19 is a mesophilic bacterium of the family Erwiniaceae.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Erwiniaceae*
	Genus	*Pantoea*
	Species	**Pantoea agglomerans**
	Full Scientific Name (LPSN)	Pantoea agglomerans (Beijerinck 1888) Gavini et al. 1989

	Synonym	"Bacillus* milletiae"*
	Synonym	"Bacterium* herbicola"*
	Synonym	Enterobacter agglomerans
	Synonym	Erwinia herbicola
	Synonym	Erwinia milletiae
	Synonym	"Bacillus* agglomerans"*

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1799]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1799]

Culture medium growth

[Ref.: #1799]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1799]

Culture medium composition

expand / minimize

[Ref.: #41239]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #41239]

Culture medium growth

[Ref.: #41239]

Culture medium composition

expand / minimize

[Ref.: #116157]

Culture medium

CIP Medium 3

[Ref.: #116157]

Culture medium growth

[Ref.: #116157]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #1799]			growth	30 °C
[Ref.: #41239]			growth	30 °C

[Ref.: #1799]	Temperature range	mesophilic
[Ref.: #41239]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #116157]	Sample type/isolated from	Corn crops
[Ref.: #116157]	Country	Canada
[Ref.: #116157]	Country ISO 3 Code	CAN
[Ref.: #116157]	Continent	North America

[Ref.: #41239]	Country	Canada
[Ref.: #41239]	Country ISO 3 Code	CAN
[Ref.: #41239]	Continent	North America
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1799]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #116157]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Erwinia herbicola 16S ribosomal RNA, partial sequence	AF130954	1266	ENA	549 tax ID	*
[Ref.: #20218]	Pantoea agglomerans strain CIP 82.100 16S ribosomal RNA gene, partial sequence	FJ611832	1360	ENA	549 tax ID	*
[Ref.: #20218]	Erwinia herbicola 16S ribosomal RNA gene, partial sequence	U80202	1454	ENA	549 tax ID	*

Availability in culture collections External links

[Ref.: #1799]

Culture collection no.

DSM 4609, ATCC 33243, CIP 82.100, DSM 3785, NCPPB 2971, CCTM 3231, CCUG 14802, NCIMB 12126

[Ref.: #74488]

SI-ID 3754

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	An algorithm for automated bacterial identification using matrix-assisted laser desorption/ionization mass spectrometry.	Jarman KH, Cebula ST, Saenz AJ, Petersen CE, Valentine NB, Kingsley MT, Wahl KL	Anal Chem	10.1021/ac990832j	2000	*

References

#1799

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4609

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41239 ; Curators of the CIP;

#74488

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3754.1 )

#116157 Collection of Institut Pasteur ; Curators of the CIP; CIP 82.100
* These data were automatically processed and therefore are not curated

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