Pantoea agglomerans (DSM 3493, ATCC 27155, CIP 57.51)

Name: Pantoea agglomerans (DSM 3493, ATCC 27155, CIP 57.51)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4992

Type strain

Strain Designation Graham Price, Brice, FDAARGOS 1447

Culture col. no. DSM 3493 ATCC 27155 CIP 57.51 NCTC 9381 WDCM 00170 20 more

NCBI tax ID(s) 1220570 549

Special Collections DSMZ CCUG JCM KCTC CIP

History DSMZ <- CIP <- NCTC <- M.S. Pereira, strain Graham Price JCM <-- Y. Kosako 83002 <-- R. Sakazaki 236 <-- W. H. Ewing CDC 1461-67 <-- D. Graham <-- NCTC 9381 <-- M. Pereira strain Graham Price (=ICPB 3435). CIP <- 1952, NCTC, Bacterium typhiflavum <- 1956, M.S. Pereira : strain Brice, Chromobacterium typhiflavum

Links

Pantoea agglomerans Graham Price is a Gram-negative, motile, rod-shaped bacterium that was isolated from knee laceration.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13737

LMG 1286,ATCC 27155,CCUG 539,JCM 1236,NCTC 9381,IAM 12659,IMI 347417,CECT 850,CCRC 14807,HAMBI 1294,VTT E-90413,KCTC 2564,AS 1.2244,HUT 8112,CFBP 3845,ICMP 12534,BCRC 14807,CCT 0545,NCIMB 13953,CDBB 959,CIP 57.51,CNCTC 5725,CGMCC 1.2244,CFBP 2240,CIP 5751,NBRC 102470,NCAIM Y.02248,DSM 3493

@ref 20215

Last LPSN update 2026-05-29 08:26:03

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Erwiniaceae

Genus Pantoea

Species Pantoea agglomerans

Full scientific name Pantoea agglomerans (Beijerinck 1888) Gavini et al. 1989

Synonyms (6)

Enterobacter agglomerans
Erwinia milletiae
"Bacillus agglomerans"
"Bacillus milletiae"
Erwinia herbicola
"Bacterium herbicola"

BacDive ID	Other strains from **Pantoea agglomerans** (27)	Type strain
4991	P. agglomerans A 111, DSM 1619
4993	P. agglomerans 19, 4834, DSM 4609, ATCC 33243, CIP 82.100, ...
4994	P. agglomerans 7, DSM 8570
4995	P. agglomerans WS 10180, DSM 30074
4996	P. agglomerans 11-W-3-2, DSM 30851
5005	P. agglomerans DSM 30072, ATCC 14537, IAM 1555
135859	P. agglomerans CIP 102282
136682	P. agglomerans CIP 55.49
138930	P. agglomerans CIP A181
139406	P. agglomerans CIP 105196, CFBP 11141
149999	P. agglomerans CCUG 38821
151209	P. agglomerans CCUG 43472
151614	P. agglomerans CCUG 44459
155182	P. agglomerans CCUG 56817
155587	P. agglomerans CCUG 58262
156961	P. agglomerans CCUG 67569
157401	P. agglomerans IMI 347416
157402	P. agglomerans IMI 347417
157403	P. agglomerans IMI 347419
157404	P. agglomerans IMI 347420
157405	P. agglomerans IMI 347422
157406	P. agglomerans IMI 347423
162782	P. agglomerans JCM 20143, ATCC 12287, IAM 1309
165446	P. agglomerans JCM 7000
178388	P. agglomerans 6Z7Tc-015, ST027512
178931	P. agglomerans C9-1 (ASW), ST036367
178932	P. agglomerans Eh 1087 (NZ), ST036368

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
116156	negative	rod-shaped
125438	negative			100

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1395	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
1395	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
37336	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
116156	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1395	positive	growth	30
37336	positive	growth	30
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	92.01

Spore formation

@ref	Spore formation	Confidence
116156
125438		90.381
125439		92.289

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
116156	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68377	15824 ChEBI	D-fructose	+	builds acid from	from API NH
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68377	17306 ChEBI	maltose	-	builds acid from	from API NH
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68377	17992 ChEBI	sucrose	+	builds acid from	from API NH
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68377	16199 ChEBI	urea	-	hydrolysis	from API NH
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68377	35581 ChEBI	indole	from API NH
116156	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
116156	15688 ChEBI	acetoin	+
68368	15688 ChEBI	acetoin	+			from API 20E
116156	17234 ChEBI	glucose		-
68377	35581 ChEBI	indole			-	from API NH
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116156	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68377	alkaline phosphatase	+	3.1.3.1	from API NH
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	-	3.2.1.23	from API zym
116156	beta-galactosidase	+	3.2.1.23
68377	beta-galactosidase	+	3.2.1.23	from API NH
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68377	beta-lactamase	-	3.5.2.6	from API NH
116156	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
68377	gamma-glutamyltransferase	+	2.3.2.2	from API NH
68382	leucine arylamidase	+	3.4.11.1	from API zym
68377	lipase	-		from API NH
68382	lipase (C 14)	-		from API zym
116156	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116156	ornithine decarboxylase	-	4.1.1.17
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
116156	oxidase	-
68377	proline-arylamidase	-	3.4.11.5	from API NH
68382	trypsin	-	3.4.21.4	from API zym
68377	tryptophan deaminase	-	4.1.99.1	from API NH
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
116156	urease	-	3.5.1.5
68377	urease	-	3.5.1.5	from API NH
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
1395	+	-	-	-	-	-	-	-	-	+	+	+	+	+/-	-	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
1395	+	-	-	-	-	-	-	-	-	+	+	+	+	-	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
1395	+	-	-	-	-	-	-	-	-	+	-	+	+	-	-	+	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
44222	-	+	-	+	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
44222	-	+	+	-	+	-	-	-	+	+	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Limb	#Leg
#Host Body-Site	#Other	#Wound
#Host Body-Site	#Limb	#Joint

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date	Sampling date
1395	knee laceration
44222	Knee laceration			Zimbabwe	ZWE	Africa		1956
67770	Knee laceration
116156	Human, Knee laceration (young man who fell while playing football)	Homo sapiens	Salisbury	United Kingdom	GBR	Europe	1956-04-03

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1395	2	Risk group (German classification) According to TRBA 466
116156	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1904838v1 assembly for Pantoea agglomerans FDAARGOS 1447	complete	GCA_019048385	549.416	8120258631	549	98.64
67770	ASM159847v1 assembly for Pantoea agglomerans NBRC 102470	contig	GCA_001598475	1220570.3	2731957702	1220570	74.18
67770	31180_D01 assembly for Pantoea agglomerans NCTC9381	contig	GCA_900454405	549.99	8117871151	549	23.25

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Pantoea agglomerans strain ATCC 27155 16S ribosomal RNA gene, partial sequence	AF130953	1271	549
20218	Pantoea agglomerans strain ATCC 27155 16S ribosomal RNA gene, partial sequence	FJ971873	797	549
20218	Pantoea agglomerans partial 16S rRNA gene, isolate OS-21.a	AM237345	1198	549
20218	Pantoea agglomerans gene for 16S rRNA, partial sequence	AB004691	1449	549
20218	Pantoea agglomerans strain LMG 1286 16S ribosomal RNA gene, partial sequence	FJ611839	1387	549
20218	Pantoea agglomerans gene for 16S rRNA, partial sequence, strain: NBRC 102470	AB681812	1466	549
20218	Pantoea agglomerans 16S ribosomal RNA, partial 5' end, strain NCTC 9381 T	AJ001239	509	549
20218	Pantoea agglomerans 16S ribosomal RNA, partial 3' end, strain NCTC 9381 T	AJ001240	509	549
20218	Pantoea agglomerans partial 16S rRNA gene, strain NCTC9381T	AJ251466	1512	549
1395	Pantoea agglomerans 16S rRNA gene (strain DSM 3493)	AJ233423	1473	549
124043	Pantoea agglomerans gene for 16S ribosomal RNA, partial sequence, strain: JCM 1236.	AB907779	1492	549
124043	Pantoea agglomerans 16S ribosomal RNA gene, partial sequence.	KP410394	1388	549
124043	Pantoea agglomerans strain NBRC 102470 16S ribosomal RNA gene, partial sequence.	MN527008	489	549
124043	Pantoea agglomerans strain NBRC 102470 16S ribosomal RNA gene, partial sequence.	MN527278	489	549
124043	Pantoea agglomerans strain NCTC9381 16S ribosomal RNA gene, partial sequence.	OQ619142	1505	549
124043	Pantoea agglomerans strain DSM 3493 16S ribosomal RNA gene, partial sequence.	KY013009	1351	549
124043	Pantoea agglomerans strain DSM 3493(T) 16S ribosomal RNA gene, partial sequence.	MF289172	948	549
124043	Pantoea agglomerans strain ATCC 27155 16S ribosomal RNA gene, partial sequence.	MT561437	962	549
124043	Pantoea agglomerans strain JCM 1236 16S ribosomal RNA gene, partial sequence.	MW090158	274	549

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1904838v1 assembly for Pantoea agglomerans FDAARGOS 1447
BV-BRC: 549.416

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	92.01	no
125439	gram_stain	BacteriaNetⓘ	negative	78.30	no
125439	motility	BacteriaNetⓘ	yes	62.87	no
125439	spore_formation	BacteriaNetⓘ	no	92.29	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pantoea agglomerans strain FDAARGOS 1447 strain Not applicable
PATRIC: 549.416

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	98.78	no
125438	spore-forming	spore-formingⓘ	no	90.38	no
125438	aerobic	aerobicⓘ	no	68.66	no
125438	thermophilic	thermophileⓘ	no	100.00	no
125438	flagellated	motile2+ⓘ	yes	80.43	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Tackling Conifer Needle Cast and Ash Dieback with Host-Derived Microbial Antagonists Exhibiting Plant Growth-Promoting Traits.	Silanskiene M, Vaitiekunaite D, Sirgedaite-Polikaitiene V.	Microorganisms	10.3390/microorganisms13112517	2025
Genetics	Insights from a Genome-Wide Study of Pantoea agglomerans UADEC20: A Promising Strain for Phosphate Solubilization and Exopolysaccharides Production.	Elizondo-Reyna E, Martinez-Montoya H, Tamayo-Ordonez Y, Cruz-Hernandez MA, Carrillo-Tripp M, Tamayo-Ordonez MC, Sosa-Santillan GJ, Rodriguez-de la Garza JA, Hernandez-Guzman M, Bocanegra-Garcia V, Acosta-Cruz E.	Curr Issues Mol Biol	10.3390/cimb47010056	2025
Genetics	Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734.	Sulja A, Pothier JF, Blom J, Moretti C, Buonaurio R, Rezzonico F, Smits THM.	BMC Genomics	10.1186/s12864-022-08966-y	2022
Biotechnology	Fungicide sensitivity of grapevine bacteria with plant growth-promoting traits and antagonistic activity as non-target microorganisms.	Andreolli M, Lampis S, Tosi L, Marano V, Zapparoli G.	World J Microbiol Biotechnol	10.1007/s11274-023-03569-5	2023
Phylogeny	Mining the Microbiome of Key Species from African Savanna Woodlands: Potential for Soil Health Improvement and Plant Growth Promotion.	Maquia IS, Fareleira P, Videira E Castro I, Brito DRA, Soares R, Chauque A, Ferreira-Pinto MM, Lumini E, Berruti A, Ribeiro NS, Marques I, Ribeiro-Barros AI.	Microorganisms	10.3390/microorganisms8091291	2020
	Prevalence and characterization of Ice Nucleation Active (INA) bacteria from rainwater in Indonesia.	Khosasih V, Prasetyo N, Sudianto E, Waturangi DE.	BMC Microbiol	10.1186/s12866-022-02521-1	2022
	Endophytic Seed-Associated Bacteria as Plant Growth Promoters of Cuban Rice (Oryza sativa L.).	Hernandez I, Taule C, Perez-Perez R, Battistoni F, Fabiano E, Villanueva-Guerrero A, Napoles MC, Herrera H.	Microorganisms	10.3390/microorganisms11092317	2023
Genetics	Three Phages One Host: Isolation and Characterization of Pantoea agglomerans Phages from a Grasshopper Specimen.	Zrelovs N, Jansons J, Kazaka T, Kazaks A, Dislers A.	Int J Mol Sci	10.3390/ijms24031820	2023
	Oak (Quercus robur) Associated Endophytic Paenibacillus sp. Promotes Poplar (Populus spp.) Root Growth In Vitro.	Vaitiekunaite D, Kuusiene S, Beniusyte E.	Microorganisms	10.3390/microorganisms9061151	2021
	Differentiation of Closely Related Oak-Associated Gram-Negative Bacteria by Label-Free Surface Enhanced Raman Spectroscopy (SERS).	Vaitiekunaite D, Snitka V.	Microorganisms	10.3390/microorganisms9091969	2021
	Durum Wheat Stress Tolerance Induced by Endophyte Pantoea agglomerans with Genes Contributing to Plant Functions and Secondary Metabolite Arsenal.	Cherif-Silini H, Thissera B, Bouket AC, Saadaoui N, Silini A, Eshelli M, Alenezi FN, Vallat A, Luptakova L, Yahiaoui B, Cherrad S, Vacher S, Rateb ME, Belbahri L.	Int J Mol Sci	10.3390/ijms20163989	2019
Genetics	Rosenbergiella meliponini D21B Isolated from Pollen Pots of the Australian Stingless Bee Tetragonula carbonaria.	Farlow AJ, Rupasinghe DB, Naji KM, Capon RJ, Spiteller D.	Microorganisms	10.3390/microorganisms11041005	2023
	Molecular Identification of Mycobacterium Species of Public Health and Veterinary Importance from Cattle in the South State of México.	Zaragoza Bastida A, Rivero Perez N, Valladares Carranza B, Isaac-Olive K, Moreno Perez P, Sandoval Trujillo H, Ramirez Duran N.	Can J Infect Dis Med Microbiol	10.1155/2017/6094587	2017
Metabolism	A Comprehensive Analysis Using Colorimetry, Liquid Chromatography-Tandem Mass Spectrometry and Bioassays for the Assessment of Indole Related Compounds Produced by Endophytes of Selected Wheat Cultivars.	Kuzniar A, Wlodarczyk K, Sadok I, Staniszewska M, Wozniak M, Furtak K, Grzadziel J, Galazka A, Skorzynska-Polit E, Wolinska A.	Molecules	10.3390/molecules26051394	2021
Phenotype	A native plant growth promoting bacterium, Bacillus sp. B55, rescues growth performance of an ethylene-insensitive plant genotype in nature.	Meldau DG, Long HH, Baldwin IT.	Front Plant Sci	10.3389/fpls.2012.00112	2012
Genetics	Unveiling wheat growth promotion potential of phosphate solubilizing Pantoea agglomerans PS1 and PS2 through genomic, physiological, and metagenomic characterizations.	Sharma P, Pandey R, Chauhan NS.	Front Microbiol	10.3389/fmicb.2024.1467082	2024
	Gram-negative sepsis caused by a rare pathogen Phytobacter ursingii.	Choice S, Sherman A, Holder K, Harrington E.	BMJ Case Rep	10.1136/bcr-2023-258384	2024
	Virus Association with Bacteria and Bacterial Cell Components Enhance Virus Infectivity.	Deng W, Almeida G, Gibson KE.	Food Environ Virol	10.1007/s12560-025-09633-7	2025
Genetics	Resolving taxonomic confusion: establishing the genus Phytobacter on the list of clinically relevant Enterobacteriaceae.	Smits THM, Arend LNVS, Cardew S, Tang-Hallback E, Mira MT, Moore ERB, Sampaio JLM, Rezzonico F, Pillonetto M.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-022-04413-8	2022
	Protective Effect of Select Bacterial Species Representative of Fresh Produce on Human Norovirus Surrogates Exposed to Disinfecting Pulsed Light.	Peloquin L, Goetz C, Jubinville E, Jean J.	Appl Environ Microbiol	10.1128/aem.00043-23	2023
	Endophytic bacterial communities in ungerminated and germinated seeds of commercial vegetables.	Acuna JJ, Hu J, Inostroza NG, Valenzuela T, Perez P, Epstein S, Sessitsch A, Zhang Q, Jorquera MA.	Sci Rep	10.1038/s41598-023-47099-4	2023
	Evaluation of sponge wipe surface sampling for collection of potential surrogates for non-spore-forming bioterrorism agents.	Aslett LD, Calfee MW, Monge M, Abdel-Hady A, Chamberlain T, Baartmans R, Touati A.	J Appl Microbiol	10.1093/jambio/lxae097	2024
	Characterization of Soil Bacteria with Potential to Degrade Benzoate and Antagonistic to Fungal and Bacterial Phytopathogens.	Esikova TZ, Anokhina TO, Abashina TN, Suzina NE, Solyanikova IP.	Microorganisms	10.3390/microorganisms9040755	2021
Phylogeny	Development of a New Semi-Selective Lysine-Ornithine-Mannitol-Arginine-Charcoal Medium for the Isolation of Pantoea Species from Environmental Sources in Japan.	Kuranishi T, Sekiguchi JI, Yanagisawa I, Akiwa M, Tokuno Y.	Microbes Environ	10.1264/jsme2.me18128	2019
	Endogenous Honeybee Gut Microbiota Metabolize the Pesticide Clothianidin.	El Khoury S, Giovenazzo P, Derome N.	Microorganisms	10.3390/microorganisms10030493	2022
Biotechnology	Validation of the Peel Plate Staphylococcus Aureus (SA) Test for Enumeration of S. aureus in Selected Foods and Non-Cultured Dairy Products: AOAC Performance Tested MethodSM 082401.	Salter RS, Durbin GW, Li S, Gilbert M, Crowley ES, Deterding A, Bastin B.	J AOAC Int	10.1093/jaoacint/qsae083	2025
Genetics	Whole-Genome Sequencing and Biotechnological Potential Assessment of Two Bacterial Strains Isolated from Poultry Farms in Belgorod, Russia.	Senchenkov VY, Lyakhovchenko NS, Nikishin IA, Myagkov DA, Chepurina AA, Polivtseva VN, Abashina TN, Delegan YA, Nikulicheva TB, Nikulin IS, Bogun AG, Solomentsev VI, Solyanikova IP.	Microorganisms	10.3390/microorganisms11092235	2023
	AOAC-OMA/MicroVal Harmonized Validation of Peel PlateTM EB (Enterobacteriaceae Bacteria), First Action 2018.05.	Salter RS, Durbin GW, Martinez D, Bird P, Bastin B, Crowley E.	J AOAC Int	10.1093/jaoacint/qsaa067	2020
Metabolism	New blue pigment produced by Pantoea agglomerans and its production characteristics at various temperatures.	Fujikawa H, Akimoto R.	Appl Environ Microbiol	10.1128/aem.00264-10	2011
Biotechnology	Growth inhibition of various Enterobacteriaceae species by the yeast Hansenula anomala during storage of moist cereal grain.	Olstorpe M, Schnurer J, Passoth V.	Appl Environ Microbiol	10.1128/aem.06024-11	2012
Pathogenicity	Antibiotic-resistant bacteria in the guts of insects feeding on plants: prospects for discovering plant-derived antibiotics.	Ignasiak K, Maxwell A.	BMC Microbiol	10.1186/s12866-017-1133-0	2017
	Stereoselective chemo-enzymatic oxidation routes for (1R,3E,7E,11S,12S)-3,7,18-dolabellatriene.	Gorner C, Hirte M, Huber S, Schrepfer P, Bruck T.	Front Microbiol	10.3389/fmicb.2015.01115	2015
Enzymology	BactQuant: an enhanced broad-coverage bacterial quantitative real-time PCR assay.	Liu CM, Aziz M, Kachur S, Hsueh PR, Huang YT, Keim P, Price LB.	BMC Microbiol	10.1186/1471-2180-12-56	2012
Enzymology	A robotic DNA purification protocol and real-time PCR for the detection of Enterobacter sakazakii in powdered infant formulae.	Derzelle S, Dilasser F.	BMC Microbiol	10.1186/1471-2180-6-100	2006
Enzymology	Molecular method for detection of total coliforms in drinking water samples.	Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ.	Appl Environ Microbiol	10.1128/aem.00546-14	2014
Metabolism	Identification, characterization and molecular adaptation of class I redox systems for the production of hydroxylated diterpenoids.	Gorner C, Schrepfer P, Redai V, Wallrapp F, Loll B, Eisenreich W, Haslbeck M, Bruck T.	Microb Cell Fact	10.1186/s12934-016-0487-6	2016
Enzymology	Use of tuf sequences for genus-specific PCR detection and phylogenetic analysis of 28 streptococcal species.	Picard FJ, Ke D, Boudreau DK, Boissinot M, Huletsky A, Richard D, Ouellette M, Roy PH, Bergeron MG.	J Clin Microbiol	10.1128/jcm.42.8.3686-3695.2004	2004
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
	KpSC-ID: a multiplex real-time PCR assay for the simultaneous detection of the Klebsiella pneumoniae species complex and specific identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae and Klebsiella variicola.	McAndrew G, Barbier E, Rodrigues C, Piveteau P, Brisse S, Reddington K.	Microbiology (Reading)	10.1099/mic.0.001587	2025
	Community-forming traits play role in effective colonization of plant-growth-promoting bacteria and improved plant growth.	Pathak D, Suman A, Sharma P, Aswini K, Govindasamy V, Gond S, Anshika R.	Front Plant Sci	10.3389/fpls.2024.1332745	2024
Phylogeny	Recommended test panel for differentiation of Klebsiella species on the basis of a trilateral interlaboratory evaluation of 18 biochemical tests.	Hansen DS, Aucken HM, Abiola T, Podschun R.	J Clin Microbiol	10.1128/jcm.42.8.3665-3669.2004	2004
	Opposite Sides of Pantoea agglomerans and Its Associated Commercial Outlook.	Lorenzi AS, Bonatelli ML, Chia MA, Peressim L, Quecine MC.	Microorganisms	10.3390/microorganisms10102072	2022
Genetics	The complete genome sequence of Pantoea agglomerans NBBC-01, isolated from rot potato tubers.	Wang Y, Chen L, Liu F, Zhang Z, Zhang F, Wang K, Fang W.	Microbiol Resour Announc	10.1128/mra.00748-23	2023
Genetics	Often in silico, rarely in vivo: characterizing endemic plant-associated microbes for system-appropriate biofertilizers.	Hone H, Li T, Kaur J, Wood JL, Sawbridge T.	Front Microbiol	10.3389/fmicb.2025.1568162	2025
	An antibacterial T6SS in Pantoea agglomerans pv. betae delivers a lysozyme-like effector to antagonize competitors.	Carobbi A, Di Nepi S, Fridman CM, Dar Y, Ben-Yaakov R, Barash I, Salomon D, Sessa G.	Environ Microbiol	10.1111/1462-2920.16100	2022
Genetics	Draft genome and description of Mixta mediterraneensis strain Marseille-Q2057^T sp.nov., a new bacterium isolated from human healthy skin.	Boxberger M, Antezack A, Magnien S, Cassir N, La Scola B.	New Microbes New Infect	10.1016/j.nmni.2021.100840	2021
	Differences in resource use lead to coexistence of seed-transmitted microbial populations.	Torres-Cortes G, Garcia BJ, Compant S, Rezki S, Jones P, Preveaux A, Briand M, Roulet A, Bouchez O, Jacobson D, Barret M.	Sci Rep	10.1038/s41598-019-42865-9	2019
Enzymology	Ca²⁺ in Hybridization Solutions for Fluorescence in situ Hybridization Facilitates the Detection of Enterobacteriaceae.	Haruta S, Iino T, Ohkuma M, Suzuki KI, Igarashi Y.	Microbes Environ	10.1264/jsme2.me16186	2017
Pathogenicity	Biocontrol Agents and Natural Feed Supplements as a Safe and Cost-Effective Way for Preventing Health Ailments Provoked by Mycotoxins.	Stoev SD.	Foods	10.3390/foods14111960	2025
Phylogeny	Genotypic comparison of Pantoea agglomerans plant and clinical strains.	Rezzonico F, Smits TH, Montesinos E, Frey JE, Duffy B.	BMC Microbiol	10.1186/1471-2180-9-204	2009
Metabolism	Antifungal Activity of Biocontrol Agents In Vitro and Potential Application to Reduce Mycotoxins (Aflatoxin B1 and Ochratoxin A).	Illueca F, Vila-Donat P, Calpe J, Luz C, Meca G, Quiles JM	Toxins (Basel)	10.3390/toxins13110752	2021
	First Report of Leaf Blight Caused by Pantoea agglomerans on Rice in Korea.	Lee HB, Hong JP, Kim SB	Plant Dis	10.1094/PDIS-05-10-0374	2010
	[Study of ectoparasitism of ultramicrobacteria of the genus Kaistia, strains NF1 and NF3 by electron and fluorescence microscopy].	Suzina NE, Esikova TZ, Akimov VN, Abashina TN, Dmitriev VV, Polivtseva VN, Duda VI, Boronin AM	Mikrobiologiia		2008
	First Report of Pantoea agglomerans Causing Leaf Blight and Vascular Wilt in Maize and Sorghum in Mexico.	Morales-Valenzuela G, Silva-Rojas HV, Ochoa-Martinez D, Valadez-Moctezuma E, Alarcon-Zuniga B, Zelaya-Molina LX, Cordova-Tellez L, Mendoza-Onofre L, Vaquera-Huerta H, Carballo-Carballo A, Farfan-Gomez A, Avila-Quezada G	Plant Dis	10.1094/PDIS-91-10-1365A	2007
Phylogeny	Isolation of endophytic diazotroph Pantoea agglomerans and nondiazotroph Enterobacter asburiae from sweetpotato stem in Japan.	Asis CA Jr, Adachi K	Lett Appl Microbiol	10.1046/j.1472-765x.2003.01434.x	2004
Phylogeny	Taxonomy of the genus Serratia.	Grimont PA, Grimont F, De Rosnay HL	J Gen Microbiol	10.1099/00221287-98-1-39	1977
	First report of bacterial wilt disease caused by Pantoea agglomerans on the ornamental perennial Oxalis articulata in China.	Wang Y, Su P, Zhang P, Zhang Y	Plant Dis	10.1094/PDIS-08-22-1883-PDN	2022
	Precise Species Identification for Enterobacter: a Genome Sequence-Based Study with Reporting of Two Novel Species, Enterobacter quasiroggenkampii sp. nov. and Enterobacter quasimori sp. nov.	Wu W, Feng Y, Zong Z.	mSystems	10.1128/msystems.00527-20	2020
	Erwinia plantamica sp. nov., a Non-Phytopathogenic Bacterium Isolated from the Seedlings of Spring Wheat (Triticum aestivum L.).	Egorshina A, Lukyantsev M, Golubev S, Boulygina E, Khilyas I, Muratova A.	Microorganisms	10.3390/microorganisms13030474	2025
Genetics	Erwinia wuhanensis sp. nov. isolated from human blood.	Zhang Y, Zhan Y, Yang J, Lu Z.	Front Microbiol	10.3389/fmicb.2025.1675452	2025
	Diverse Virulence Attributes of Pantoea alfalfae sp. nov. CQ10 Responsible for Bacterial Leaf Blight in Alfalfa Revealed by Genomic Analysis.	Yao B, Huang R, Zhang Z, Shi S.	Int J Mol Sci	10.3390/ijms24098138	2023
Phylogeny	Pantoea punctata sp. nov., Pantoea citrea sp. nov., and Pantoea terrea sp. nov. isolated from fruit and soil samples.	Kageyama B, Nakae M, Yagi S, Sonoyama T	Int J Syst Bacteriol	10.1099/00207713-42-2-203	1992

References

#1395	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3493
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#37336	; Curators of the CIP;
#44222	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 539
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68377	Automatically annotated from API NH .
#68382	Automatically annotated from API zym .
#116156	Collection of Institut Pasteur ; Curators of the CIP; CIP 57.51
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pantoea agglomerans (DSM 3493, ATCC 27155, CIP 57.51)

Name and taxonomic classification

Morphology

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Physiology and metabolism

Oxygen tolerance

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